Amber Archive May 2010: by author

aapeters.ncsu.edu
- [AMBER] PIMD average trajectory (Tue May 11 2010 - 13:46:45 PDT)
Adrian Roitberg
- Re: [AMBER] Problem about Sander with large system (Mon May 24 2010 - 20:03:24 PDT)
- Re: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 12:41:36 PDT)
Alan
- Re: [AMBER] MMPBSA.py.MPI (Tue May 25 2010 - 05:39:16 PDT)
- [AMBER] MMPBSA.py.MPI (Tue May 25 2010 - 03:17:23 PDT)
- Re: [AMBER] MMPBSA.py update (Mon May 24 2010 - 23:37:21 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 12:51:32 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 06:03:59 PDT)
- Re: [AMBER] ESP VS AM1BCC (Fri May 14 2010 - 02:09:44 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 23:24:51 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 15:04:00 PDT)
- Re: [AMBER] a recent review about force fields (Thu May 13 2010 - 09:09:09 PDT)
- Re: [AMBER] about SHAKE and double x single precision (Thu May 13 2010 - 09:04:08 PDT)
- [AMBER] Re: about SHAKE and double x single precision (Thu May 13 2010 - 08:13:36 PDT)
- [AMBER] about SHAKE and double x single precision (Thu May 13 2010 - 08:04:38 PDT)
- Re: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 07:51:38 PDT)
- Re: [AMBER] ESP VS AM1BCC (Thu May 13 2010 - 02:19:42 PDT)
- Re: [AMBER] a recent review about force fields (Wed May 12 2010 - 10:04:27 PDT)
- [AMBER] a recent review about force fields (Wed May 12 2010 - 08:46:19 PDT)
- Re: [AMBER] ESP VS AM1BCC (Wed May 12 2010 - 02:58:39 PDT)
- Re: [AMBER] ambertools 1.4, tests (Thu May 06 2010 - 09:58:57 PDT)
- Re: [AMBER] ambertools 1.4, tests (Thu May 06 2010 - 07:18:53 PDT)
- Re: [AMBER] ambertools 1.4, tests (Wed May 05 2010 - 08:12:43 PDT)
- Re: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Wed May 05 2010 - 08:03:26 PDT)
- Re: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Wed May 05 2010 - 07:02:50 PDT)
- Re: [AMBER] ambertools 1.4, tests (Wed May 05 2010 - 01:19:38 PDT)
- Re: [AMBER] Amber with MPI (GNU and Intel) on Mac SL (Tue May 04 2010 - 02:26:38 PDT)
- [AMBER] Amber with MPI (GNU and Intel) on Mac SL (Mon May 03 2010 - 09:56:13 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 08:58:22 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 03:56:29 PDT)
- Re: [AMBER] ambertools 1.4, tests (Sun May 02 2010 - 10:38:58 PDT)
- Re: [AMBER] xgrid in opempi 1.4.1 still broken (Sun May 02 2010 - 10:28:04 PDT)
- Re: [AMBER] a possible typo bug while building pmemd with mpi (Sat May 01 2010 - 00:04:42 PDT)
Alex Boncheff
- Re: [AMBER] Setting Atom Types (Tue May 25 2010 - 22:00:28 PDT)
- Re: [AMBER] Setting Atom Types (Tue May 25 2010 - 11:20:44 PDT)
- [AMBER] Setting Atom Types (Tue May 25 2010 - 08:44:17 PDT)
- [AMBER] Setting Atom Types (Tue May 25 2010 - 08:32:27 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:43:09 PDT)
- [AMBER] leap issues (Fri May 21 2010 - 10:09:39 PDT)
Andrew Voronkov
- Re: Re: [AMBER] error - binding_energy.mmpbsa run (Mon May 17 2010 - 22:49:27 PDT)
- [AMBER] error - binding_energy.mmpbsa run (Sun May 16 2010 - 03:53:52 PDT)
- [AMBER] nothing is written to .mdcrd file (Tue May 04 2010 - 07:15:51 PDT)
Antonios Samiotakis
- Re: [AMBER] Coordinate arrays in sander (Tue May 25 2010 - 13:24:06 PDT)
- [AMBER] Coordinate arrays in sander (Wed May 19 2010 - 15:59:39 PDT)
Asfa Ali
- [AMBER] regarding K+ ions (Thu May 27 2010 - 22:32:45 PDT)
- [AMBER] regarding MMPBSA (Tue May 25 2010 - 03:15:05 PDT)
- Re: [AMBER] AMBER (Mon May 24 2010 - 23:31:08 PDT)
- [AMBER] AMBER (Mon May 24 2010 - 22:40:35 PDT)
- [AMBER] analysis of results (Mon May 17 2010 - 03:08:43 PDT)
- Re: [AMBER] regarding H-bond & torsion angles (Sat May 15 2010 - 00:25:20 PDT)
- [AMBER] regarding H-bond & torsion angles (Fri May 14 2010 - 22:30:44 PDT)
- [AMBER] regarding ambertools (Thu May 06 2010 - 10:38:02 PDT)
ashutosh shandilya
- [AMBER] Chloroform solvent model (Tue May 18 2010 - 00:19:21 PDT)
- [AMBER] B-factor (Tue May 18 2010 - 00:14:44 PDT)
- Re: [AMBER] pressure not constant (Thu May 13 2010 - 00:08:03 PDT)
- Re: [AMBER] pressure not constant (Tue May 11 2010 - 23:25:07 PDT)
- [AMBER] pressure not constant (Tue May 11 2010 - 22:59:13 PDT)
- Re: [AMBER] ifbox=2 in prmtop but angles are not correct (Tue May 04 2010 - 03:41:04 PDT)
- [AMBER] ifbox=2 in prmtop but angles are not correct (Sun May 02 2010 - 03:35:01 PDT)
Aurora Clark
- [AMBER] Compiling Amber10 on Mac Snow Leopard with gcc/gfortran (Mon May 24 2010 - 10:22:34 PDT)
Axel
- Re: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Tue May 04 2010 - 08:33:00 PDT)
- [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Tue May 04 2010 - 07:17:50 PDT)
Balazs Jojart
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 23:47:29 PDT)
- Re: [AMBER] about VMD's molecular surface area calculation (Wed May 05 2010 - 04:53:09 PDT)
- Re: [AMBER] about VMD's molecular surface area calculation (Wed May 05 2010 - 01:56:24 PDT)
Barbault Florent
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 13:35:39 PDT)
Beale, John
- [AMBER] ptraj rms error (Tue May 25 2010 - 08:33:01 PDT)
Ben Roberts
- Re: [AMBER] ambertools 1.4, tests (Thu May 06 2010 - 09:26:01 PDT)
- Re: [AMBER] ambertools 1.4, tests (Wed May 05 2010 - 14:34:31 PDT)
- Re: [AMBER] NaNs in wham analysis (Wed May 05 2010 - 14:04:58 PDT)
- Re: [AMBER] NaNs in wham analysis (Wed May 05 2010 - 11:45:00 PDT)
- Re: [AMBER] ambertools 1.4, tests (Wed May 05 2010 - 08:04:50 PDT)
- Re: [AMBER] ambertools 1.4, tests (Tue May 04 2010 - 16:35:57 PDT)
- Re: [AMBER] ambertools 1.4, tests (Tue May 04 2010 - 14:45:23 PDT)
- Re: [AMBER] use of "ambmask" ? (Tue May 04 2010 - 06:49:58 PDT)
- Re: [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 06:31:40 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 07:53:26 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 06:53:38 PDT)
Beroza, Paul
- FW: [AMBER] MMPBSA.py update (Mon May 24 2010 - 17:39:51 PDT)
- [AMBER] ptraj clustering output: coordinates transformed? (Fri May 07 2010 - 08:45:20 PDT)
Bill Miller III
- Re: [AMBER] MMPBSA.py update install problem (Mon May 31 2010 - 17:29:43 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Mon May 31 2010 - 05:10:59 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 17:44:09 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 06:33:09 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Fri May 28 2010 - 04:05:31 PDT)
- Re: [AMBER] how to add Mg2+ (Thu May 27 2010 - 10:34:20 PDT)
- Re: [AMBER] problem with MMPBSA (Tue May 25 2010 - 07:20:14 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Tue May 25 2010 - 04:18:38 PDT)
- Re: [AMBER] MMPBSA.py.MPI (Tue May 25 2010 - 04:03:08 PDT)
- Re: [AMBER] regarding MMPBSA (Tue May 25 2010 - 03:57:03 PDT)
- Re: FW: [AMBER] MMPBSA.py update (Mon May 24 2010 - 18:07:42 PDT)
- Re: [AMBER] How to do clustering with ptraj? (Mon May 24 2010 - 09:31:04 PDT)
- Re: [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Wed May 19 2010 - 20:37:59 PDT)
- Re: [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Tue May 18 2010 - 17:05:59 PDT)
- Re: [AMBER] ntx value for MMPBSA normal mode analysis (Tue May 18 2010 - 15:44:18 PDT)
- Re: Re: [AMBER] error - binding_energy.mmpbsa run (Tue May 18 2010 - 03:57:19 PDT)
- Re: [AMBER] entropy-problem (Mon May 17 2010 - 18:55:28 PDT)
- Re: [AMBER] About MM-PBSA's extracting coordinate scirpt (Sat May 08 2010 - 20:12:38 PDT)
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Thu May 06 2010 - 13:42:36 PDT)
- Re: [AMBER] how to get decomposed energies of every snapshot (Thu May 06 2010 - 07:06:19 PDT)
- Re: [AMBER] How to analyze without printing out mdcrd (Mon May 03 2010 - 13:57:06 PDT)
- Re: [AMBER] adding salt for MM_PBSA (Mon May 03 2010 - 03:53:43 PDT)
Bill Ross
- Re: [AMBER] Defunction of ibelly in Sander (Sun May 30 2010 - 11:22:26 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Fri May 28 2010 - 10:20:24 PDT)
- Re: [AMBER] regarding K+ ions (Fri May 28 2010 - 10:15:35 PDT)
- Re: [AMBER] regarding K+ ions (Fri May 28 2010 - 10:11:09 PDT)
- Re: [AMBER] how to add Mg2+ (Thu May 27 2010 - 10:44:01 PDT)
- Re: [AMBER] Reply on closest waters problem (Wed May 26 2010 - 10:36:17 PDT)
- Re: [AMBER] Solvate box (Wed May 26 2010 - 09:46:22 PDT)
- Re: [AMBER] Dynamic Cross Correlation Map (Wed May 26 2010 - 09:22:50 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 17:56:39 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 16:41:01 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 16:39:17 PDT)
- Re: [AMBER] Setting Atom Types (Tue May 25 2010 - 11:29:45 PDT)
- Re: [AMBER] Square planar complex and improper torsions (Tue May 25 2010 - 10:58:34 PDT)
- Re: [AMBER] Setting Atom Types (Tue May 25 2010 - 10:45:03 PDT)
- Re: [AMBER] AMBER (Tue May 25 2010 - 09:57:28 PDT)
- Re: [AMBER] AMBER (Mon May 24 2010 - 23:01:29 PDT)
- Re: [AMBER] Problem about Sander with large system (Mon May 24 2010 - 22:50:03 PDT)
- Re: [AMBER] Square planar complex and improper torsions (Mon May 24 2010 - 17:06:49 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Sat May 22 2010 - 10:45:56 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:52:55 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:20:48 PDT)
- Re: [AMBER] Mutations and minimizations (Fri May 21 2010 - 09:20:12 PDT)
- Re: [AMBER] sleap bugs or compilation problem?! (Thu May 20 2010 - 14:22:19 PDT)
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 08:28:06 PDT)
- Re: [AMBER] Ambertools 1.4 installation cygwin (Wed May 19 2010 - 23:10:50 PDT)
- Re: [AMBER] equilibration (Wed May 19 2010 - 11:55:19 PDT)
- Re: [AMBER] Production run for MM/PBSA (Wed May 19 2010 - 10:24:04 PDT)
- Re: [AMBER] Positive Etot value (Wed May 19 2010 - 10:18:08 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 16:14:48 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 13:58:16 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 13:54:51 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 12:31:12 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 12:09:28 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:59:25 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:39:41 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:01:17 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 10:46:14 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 10:05:19 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 09:59:11 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 09:48:19 PDT)
- Re: [AMBER] Hybridization state effects (Sun May 16 2010 - 12:25:43 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Fri May 14 2010 - 13:08:32 PDT)
- Re: [AMBER] non-standard residue parameters (Fri May 14 2010 - 09:53:53 PDT)
- Re: [AMBER] sander and ptraj problem (Thu May 13 2010 - 10:15:57 PDT)
- Re: [AMBER] sander and ptraj problem (Wed May 12 2010 - 16:15:59 PDT)
- Re: [AMBER] sander and ptraj problem (Wed May 12 2010 - 15:16:56 PDT)
- Re: [AMBER] sander and ptraj problem (Wed May 12 2010 - 14:56:31 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:25:30 PDT)
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 10:00:40 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 14:39:34 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 13:03:54 PDT)
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 12:49:20 PDT)
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 12:29:38 PDT)
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 11:16:17 PDT)
- Re: [AMBER] [Fwd: problem in bond connection] (Tue May 11 2010 - 10:44:09 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 10:39:06 PDT)
- [AMBER] Anton supercomputer (Mon May 10 2010 - 14:02:57 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Sat May 08 2010 - 08:16:42 PDT)
- RE: [AMBER] How to make ionic liquid solvent box? (Wed May 05 2010 - 13:54:04 PDT)
- Re: [AMBER] molecular dynamics set up (Tue May 04 2010 - 17:17:11 PDT)
- Re: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 15:47:41 PDT)
- RE: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 15:44:14 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:23:37 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:10:46 PDT)
- Re: [AMBER] problem on running saveAmberParm (Tue May 04 2010 - 10:26:56 PDT)
- Re: [AMBER] How to analyze without printing out mdcrd (Mon May 03 2010 - 13:55:28 PDT)
- Re: [AMBER] How to make ionic liquid solvent box? (Mon May 03 2010 - 13:05:42 PDT)
Carlos Simmerling
- Re: [AMBER] EP with ff99SB (Sun May 23 2010 - 19:26:24 PDT)
- Re: [AMBER] equilibration (Wed May 19 2010 - 13:11:39 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Tue May 18 2010 - 08:04:52 PDT)
- Re: [AMBER] remd convergence (Tue May 18 2010 - 03:54:14 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 19:41:59 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 10:40:51 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:22:37 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:02:35 PDT)
- Re: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 09:48:54 PDT)
- Re: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 08:45:10 PDT)
- Re: [AMBER] protein moves out of the box when using ptraj center image (Tue May 11 2010 - 16:59:28 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Sat May 08 2010 - 04:07:26 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 03:01:02 PDT)
- Re: [AMBER] Sander vs Sander.MPI vs Pmemd (Fri May 07 2010 - 03:40:33 PDT)
- Re: [AMBER] how to get decomposed energies of every snapshot (Thu May 06 2010 - 07:07:35 PDT)
- Re: Re: Re: [AMBER] can't make proper use of IGB flag, it cause"inputconversion error" (Thu May 06 2010 - 07:06:51 PDT)
- Re: Re: [AMBER] can't make proper use of IGB flag, it cause "inputconversion error" (Thu May 06 2010 - 06:46:37 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Thu May 06 2010 - 06:01:11 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Thu May 06 2010 - 05:28:11 PDT)
- Re: [AMBER] can't make proper use of IGB flag, it cause "input conversion error" (Thu May 06 2010 - 04:16:48 PDT)
- Re: [AMBER] RE: AMBER Wiki (Wed May 05 2010 - 06:23:29 PDT)
- Re: [AMBER] NMR restraint ? (Wed May 05 2010 - 03:59:51 PDT)
- Re: [AMBER] nothing is written to .mdcrd file (Tue May 04 2010 - 07:32:38 PDT)
- Re: [AMBER] molecular dynamics set up (Tue May 04 2010 - 06:07:37 PDT)
- Re: [AMBER] molecular dynamics set up (Mon May 03 2010 - 16:57:05 PDT)
case
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 11:02:25 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 09:35:38 PDT)
- Re: [AMBER] AmberTools-1.4 Test Problem (Mon May 31 2010 - 07:57:34 PDT)
- Re: [AMBER] installing AmberTools 1.4 on AIX (Sat May 29 2010 - 19:32:42 PDT)
- Re: [AMBER] FF02EP force field (Sat May 29 2010 - 14:43:40 PDT)
- Re: [AMBER] test run error in amber10 installation (Sat May 29 2010 - 08:20:04 PDT)
- Re: [AMBER] Setting Atom Types (Thu May 27 2010 - 09:03:23 PDT)
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 06:06:51 PDT)
- Re: [AMBER] B-DNA (Wed May 26 2010 - 05:38:14 PDT)
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 05:35:46 PDT)
- Re: [AMBER] Setting Atom Types (Wed May 26 2010 - 05:30:06 PDT)
- Re: [AMBER] Coordinate arrays in sander (Wed May 26 2010 - 05:00:22 PDT)
- Re: [AMBER] Setting Atom Types (Tue May 25 2010 - 12:48:14 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Tue May 25 2010 - 05:06:37 PDT)
- Re: [AMBER] Compiling Amber10 on Mac Snow Leopard with gcc/gfortran (Mon May 24 2010 - 10:39:16 PDT)
- Re: [AMBER] How to do clustering with ptraj? (Mon May 24 2010 - 09:33:04 PDT)
- Re: [AMBER] Atom out of bounds/prepin file problem (Mon May 24 2010 - 05:58:24 PDT)
- Re: [AMBER] EP with ff99SB (Sun May 23 2010 - 15:32:26 PDT)
- Re: [AMBER] help about test failures (Sat May 22 2010 - 17:24:15 PDT)
- Re: [AMBER] TI Job crashes at some lambda values during heating (Sat May 22 2010 - 17:18:44 PDT)
- Re: [AMBER] nmr restraints (Fri May 21 2010 - 12:15:52 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 12:01:38 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 11:43:45 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 11:19:38 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:28:35 PDT)
- Re: [AMBER] sleap bugs or compilation problem?! (Fri May 21 2010 - 07:48:09 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Fri May 21 2010 - 07:00:58 PDT)
- Re: [AMBER] compiling problem, (Fri May 21 2010 - 06:55:57 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 19:03:53 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 06:17:39 PDT)
- Re: [AMBER] tleap problems in Fedora Core 12 (Fri May 14 2010 - 18:17:30 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 18:00:36 PDT)
- Re: [AMBER] make test.parallel never finishes (Fri May 14 2010 - 17:45:27 PDT)
- [AMBER] tleap problems in Fedora Core 12 (Fri May 14 2010 - 12:58:27 PDT)
- Re: [AMBER] about SHAKE and double x single precision (Thu May 13 2010 - 08:59:17 PDT)
- Re: [AMBER] Query regarding Distance Restraints (Thu May 13 2010 - 04:45:18 PDT)
- Re: [AMBER] pressure not constant (Thu May 13 2010 - 04:40:46 PDT)
- Re: [AMBER] tleap segmentation fault (Wed May 12 2010 - 17:58:54 PDT)
- Re: [AMBER] Error while compiling GPU version of PMEMD in Amber 11 (Wed May 12 2010 - 12:13:31 PDT)
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 09:57:21 PDT)
- Re: [AMBER] PIMD average trajectory (Wed May 12 2010 - 07:32:06 PDT)
- Re: [AMBER] pressure not constant (Wed May 12 2010 - 05:26:26 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Wed May 12 2010 - 05:19:31 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 14:57:20 PDT)
- Re: [AMBER] SPC/E and TIP3P water models (Tue May 11 2010 - 11:18:31 PDT)
- Re: [AMBER] [Fwd: problem in bond connection] (Tue May 11 2010 - 07:03:30 PDT)
- Re: [AMBER] How to disable the 1-4 interaction (Tue May 11 2010 - 05:49:58 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sun May 09 2010 - 07:10:38 PDT)
- Re: [AMBER] Installation of Amber10 (Sat May 08 2010 - 05:42:46 PDT)
- Re: [AMBER] Installation of Amber10 (Thu May 06 2010 - 05:47:34 PDT)
- Re: [AMBER] Amber 11- updated scripts for constant pH simulations and for MMPB/SA (Wed May 05 2010 - 06:14:48 PDT)
- Re: [AMBER] crash in minimization step (Wed May 05 2010 - 04:56:02 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 12:00:18 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:29:15 PDT)
- Re: [AMBER] ifbox=2 in prmtop but angles are not correct (Tue May 04 2010 - 04:58:31 PDT)
- Re: [AMBER] ifbox=2 in prmtop but angles are not correct (Tue May 04 2010 - 04:57:26 PDT)
- Re: [AMBER] problem on running saveAmberParm (Tue May 04 2010 - 04:54:23 PDT)
- Re: [AMBER] Error in umbrella run in AMBER 10 (Tue May 04 2010 - 04:41:09 PDT)
- Re: [AMBER] nmr order parameter and autocorrelation (Mon May 03 2010 - 13:33:20 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 08:02:58 PDT)
- Re: [AMBER] ifbox=2 in prmtop but angles are not correct (Mon May 03 2010 - 07:08:03 PDT)
- Re: [AMBER] molecular dynamics set up (Mon May 03 2010 - 06:57:33 PDT)
- Re: [AMBER] Undefined symbols: "___builtin___strcpy_chk" and more (Sat May 01 2010 - 19:36:13 PDT)
Catein Catherine
- RE: [AMBER] How to interpret ptraj clustering results (Thu May 27 2010 - 00:40:24 PDT)
- [AMBER] what is the meaning of GBSA decompostion results for drug-drug interaction? (Thu May 27 2010 - 00:37:58 PDT)
- RE: [AMBER] How to interpret the results of ptraj/contacts (Wed May 26 2010 - 01:21:30 PDT)
- [AMBER] How to interpret the results of ptraj/contacts (Wed May 26 2010 - 01:12:04 PDT)
- [AMBER] How to interpret ptraj clustering results (Wed May 26 2010 - 01:02:10 PDT)
- [AMBER] How to calculate ensemble-averaged electrostatic calculations with VMD? (Mon May 24 2010 - 09:17:52 PDT)
- [AMBER] How to do clustering with ptraj? (Mon May 24 2010 - 09:11:30 PDT)
- [AMBER] Is the results of NAMD equals to AMBER's sander? (Mon May 24 2010 - 09:06:30 PDT)
- [AMBER] Can I define target MD or steered MD with mean square internal deviation (MSID) using AMBER 10? (Sat May 22 2010 - 04:55:34 PDT)
- RE: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 16:22:07 PDT)
- [AMBER] How to design starting geometries for steered MD? How to check convergence of the results? (Thu May 20 2010 - 02:42:46 PDT)
- RE: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 02:29:44 PDT)
- [AMBER] umbrella sampling method or steered MD should be used? (Wed May 19 2010 - 23:27:29 PDT)
- [AMBER] Sander vs Sander.MPI vs Pmemd (Fri May 07 2010 - 03:10:23 PDT)
- [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer? (Fri May 07 2010 - 03:07:55 PDT)
- [AMBER] Error in umbrella run in AMBER 10 (Tue May 04 2010 - 03:41:30 PDT)
- RE: [AMBER] Is AMBER 10 compatible with notebook? (Sat May 01 2010 - 10:20:43 PDT)
- RE: [AMBER] Is AMBER 10 compatible with notebook? (Sat May 01 2010 - 10:19:50 PDT)
- [AMBER] Is AMBER 10 compatible with notebook? (Sat May 01 2010 - 08:18:58 PDT)
Chanchal
- [AMBER] problem with MMPBSA (Tue May 25 2010 - 06:54:18 PDT)
Cojocaru,Vlad
- [AMBER] unsubscribe (Thu May 06 2010 - 01:12:19 PDT)
Cristina Sisu
- [AMBER] Mutations and minimizations (Fri May 21 2010 - 03:35:21 PDT)
Crowley, Michael
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 10:03:14 PDT)
Daniel Roe
- Re: [AMBER] ptraj rms error (Tue May 25 2010 - 12:59:24 PDT)
- Re: [AMBER] writing in ptraj a new action requiring prior knowledge of the average coordinates (Mon May 24 2010 - 18:45:40 PDT)
- Re: [AMBER] radius of gyration in ptraj (Mon May 24 2010 - 18:36:28 PDT)
- Re: [AMBER] help about test failures (Fri May 21 2010 - 14:15:03 PDT)
- Re: [AMBER] compiling problem, (Fri May 21 2010 - 12:17:26 PDT)
- Re: [AMBER] hbond and acceptor definition (Tue May 18 2010 - 11:46:03 PDT)
- Re: [AMBER] hbond and acceptor definition (Tue May 18 2010 - 08:32:59 PDT)
- Re: [AMBER] Measure distances and angles with ptraj (Mon May 10 2010 - 04:46:55 PDT)
- Re: [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer? (Fri May 07 2010 - 05:53:48 PDT)
- Re: [AMBER] parsing expressions in the radial function of ptraj (Fri May 07 2010 - 05:43:13 PDT)
- Re: [AMBER] fsetpos failed on when looking for box coordinates (Thu May 06 2010 - 21:46:46 PDT)
- Re: [AMBER] How to analyze without printing out mdcrd (Tue May 04 2010 - 05:52:31 PDT)
David A. Case
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Wed May 19 2010 - 10:44:50 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Wed May 19 2010 - 05:09:19 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Tue May 18 2010 - 20:09:02 PDT)
David Dubins
- [AMBER] Installing AmberTools 1.4 in Ubuntu 10.04 (Thu May 27 2010 - 11:36:23 PDT)
David Watson
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 11:16:47 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Fri May 21 2010 - 06:05:56 PDT)
- Re: [AMBER] Re: Amber11 installation on MacOS10.6 COMPLETE (Tue May 18 2010 - 09:25:28 PDT)
- Re: [AMBER] amber10 installation error in linux (Mon May 17 2010 - 21:46:47 PDT)
- Re: [AMBER] amber10 installation error in linux (Mon May 17 2010 - 21:17:30 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 09:43:21 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 14:12:08 PDT)
- Re: [AMBER] ambertools 1.4, tests (Thu May 06 2010 - 10:23:58 PDT)
- Re: [AMBER] Installation of Amber10 (Thu May 06 2010 - 05:32:40 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:25:39 PDT)
- Re: [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 06:46:15 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 07:19:53 PDT)
- Re: [AMBER] xgrid in opempi 1.4.1 still broken (Sat May 01 2010 - 19:28:00 PDT)
Dean Cuebas
- Re: [AMBER] can't make proper use of IGB flag, it cause "inputconversion error" (Sat May 08 2010 - 17:27:48 PDT)
- [AMBER] Shaking up a XRC structure with a slightly different substrate (Tue May 04 2010 - 13:09:51 PDT)
- Re: [AMBER] a possible typo bug while building pmemd with mpi (Mon May 03 2010 - 10:43:33 PDT)
Dian Jiao
- Re: [AMBER] How to analyze without printing out mdcrd (Tue May 04 2010 - 07:03:05 PDT)
- [AMBER] How to analyze without printing out mdcrd (Mon May 03 2010 - 13:47:22 PDT)
Dino Rogerio Coinete Franklin
- [AMBER] sleap bugs or compilation problem?! (Thu May 20 2010 - 14:09:40 PDT)
Dmitry Mukha
- Re: [AMBER] Setting Atom Types (Fri May 28 2010 - 00:33:56 PDT)
- Re: [AMBER] Setting Atom Types (Thu May 27 2010 - 08:10:27 PDT)
- Re: [AMBER] sander.MPI problem (Sat May 22 2010 - 07:49:13 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Sat May 22 2010 - 04:08:15 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Fri May 21 2010 - 06:00:46 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Tue May 18 2010 - 21:13:15 PDT)
- [AMBER] AT1.4 installation errors (logs are attached) (Tue May 18 2010 - 08:19:13 PDT)
- Re: [AMBER] make test.parallel never finishes (Fri May 14 2010 - 20:57:28 PDT)
Dongshan Wei
- Re: [AMBER] reg REMD (Mon May 31 2010 - 12:04:48 PDT)
- [AMBER] Re: parallel problem for systems only including bond, angle and dihedral interactions (Tue May 25 2010 - 10:16:36 PDT)
Douglas Kojetin
- Re: [AMBER] NMR distance restraints read but not used (Thu May 27 2010 - 08:36:58 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Sat May 22 2010 - 10:23:56 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Sat May 22 2010 - 10:00:11 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 12:03:43 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 11:40:19 PDT)
- Re: [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 11:30:33 PDT)
- [AMBER] NMR distance restraints read but not used (Fri May 21 2010 - 10:40:15 PDT)
Dwight McGee
- Re: [AMBER] ntx value for MMPBSA normal mode analysis (Tue May 18 2010 - 15:18:08 PDT)
- Re: Re: [AMBER] About MM-PBSA's extracting coordinate scirpt (Sun May 09 2010 - 00:00:13 PDT)
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Wed May 05 2010 - 08:04:51 PDT)
eduardo.troche.uvigo.es
- [AMBER] nmr restraints (Wed May 19 2010 - 01:25:48 PDT)
Emily Curtis
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:40:17 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 11:12:10 PDT)
- Re: [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 10:54:01 PDT)
- [AMBER] question about errors during make install (Tue May 04 2010 - 10:53:10 PDT)
- [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 06:18:52 PDT)
erik zuiderweg
- Re: [AMBER] Compiling Amber10 on Mac Snow Leopard with gcc/gfortran (Mon May 24 2010 - 11:04:42 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 07:53:12 PDT)
- [AMBER] Re: Amber11 installation on MacOS10.6 COMPLETE (Tue May 18 2010 - 09:14:53 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 15:35:11 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 12:44:21 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 11:30:16 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 10:46:57 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 10:46:38 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 08:57:26 PDT)
- PROGRESS! [AMBER] installation on MacOS10.6 (Sun May 16 2010 - 12:27:10 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sun May 16 2010 - 11:33:33 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 14:19:33 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 09:55:23 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 08:11:29 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 09:22:17 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 08:23:08 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 08:16:22 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 05:43:54 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 14:20:19 PDT)
- [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 13:52:09 PDT)
Fernando Martín García
- Re: [AMBER] Measure distances and angles with ptraj (Mon May 10 2010 - 23:23:27 PDT)
- [AMBER] Measure distances and angles with ptraj (Mon May 10 2010 - 03:55:29 PDT)
FyD
- Re: [AMBER] RESP check (Mon May 24 2010 - 00:10:58 PDT)
- Re: [AMBER] 1,2 -dichloroethane solvent model (Fri May 21 2010 - 23:00:47 PDT)
- Re: [AMBER] The force field (Fri May 21 2010 - 22:36:25 PDT)
- Re: [AMBER] Iodine ESP (Mon May 17 2010 - 03:46:58 PDT)
- Re: [AMBER] ESP VS AM1BCC (Fri May 14 2010 - 02:39:02 PDT)
- Re: [AMBER] non-standard residue parameters (Fri May 14 2010 - 00:24:04 PDT)
- Re: [AMBER] ESP VS AM1BCC (Fri May 14 2010 - 00:18:23 PDT)
- Re: [AMBER] viewing resp esout files (Thu May 13 2010 - 23:44:17 PDT)
- Re: [AMBER] Iodine ESP (Fri May 07 2010 - 09:45:47 PDT)
- Re: [AMBER] esp and resp with pcgamess (Fri May 07 2010 - 09:38:19 PDT)
- Re: [AMBER] esp and resp with pcgamess (Fri May 07 2010 - 09:30:55 PDT)
- [AMBER] Re: Fortran runtime error: Bad value during integer read (Mon May 03 2010 - 00:06:22 PDT)
Ganesh Kamath
- Re: [AMBER] hbond and acceptor definition (Tue May 18 2010 - 09:43:12 PDT)
- [AMBER] hbond and acceptor definition (Mon May 17 2010 - 14:25:33 PDT)
- Re: [AMBER] parsing expressions in the radial function of ptraj (Fri May 07 2010 - 05:52:02 PDT)
- Re: [AMBER] conversion to netcdf format (Thu May 06 2010 - 06:59:43 PDT)
- [AMBER] conversion to netcdf format (Thu May 06 2010 - 06:31:44 PDT)
- [AMBER] Kirkwood g factor (Tue May 04 2010 - 08:46:21 PDT)
Gannett, Peter
- [AMBER] RE: AMBER Wiki (Wed May 05 2010 - 05:48:11 PDT)
Geoffrey Wood
- [AMBER] Davies Bouldin Index with DME (Tue May 04 2010 - 07:41:29 PDT)
- [AMBER] Davies Bouldin Index with DME (Tue May 04 2010 - 07:31:25 PDT)
- [AMBER] Davies Bouldin Index with DME in ptraj (Mon May 03 2010 - 13:48:36 PDT)
- [AMBER] davies bouldin index and DME (Mon May 03 2010 - 10:50:17 PDT)
George Tzotzos
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 09:58:36 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 07:52:07 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 06:47:27 PDT)
- [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 02:09:41 PDT)
geyan
- Re: Re: [AMBER] About MM-PBSA's extracting coordinate scirpt (Sat May 08 2010 - 23:50:08 PDT)
- [AMBER] About MM-PBSA's extracting coordinate scirpt (Sat May 08 2010 - 09:15:50 PDT)
- Re: Re: Re: [AMBER] can't make proper use of IGB flag, it cause"inputconversion error" (Thu May 06 2010 - 06:56:40 PDT)
- Re: Re: [AMBER] can't make proper use of IGB flag, it cause "inputconversion error" (Thu May 06 2010 - 06:39:45 PDT)
- [AMBER] can't make proper use of IGB flag, it cause "input conversion error" (Thu May 06 2010 - 01:30:43 PDT)
- [AMBER] about VMD's molecular surface area calculation (Wed May 05 2010 - 01:45:49 PDT)
Guanglei Cui
- [AMBER] AT 1.4 DFTB (Fri May 21 2010 - 15:01:35 PDT)
Gustavo Seabra
- Re: [AMBER] antechamber (Wed May 26 2010 - 07:12:55 PDT)
- Re: [AMBER] Energy minimization OR black art (Wed May 26 2010 - 07:11:22 PDT)
- Re: [AMBER] Solvate box (Wed May 26 2010 - 06:44:15 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 21:13:10 PDT)
- Re: [AMBER] Dipoles calculation (Tue May 25 2010 - 13:42:41 PDT)
- Re: [AMBER] sander.MPI problem (Fri May 21 2010 - 08:28:27 PDT)
- Re: [AMBER] sander.MPI problem (Thu May 20 2010 - 13:35:23 PDT)
Hector A. Baldoni
- [AMBER] How to disable the 1-4 interaction (Mon May 10 2010 - 08:25:21 PDT)
Hemant Kumar
- [AMBER] Percholate ions (Mon May 24 2010 - 02:34:25 PDT)
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 12:27:16 PDT)
- Re: [AMBER] Energy of Water Molecules (Tue May 11 2010 - 11:30:17 PDT)
- [AMBER] Energy of Water Molecules (Tue May 11 2010 - 10:56:10 PDT)
Homa Azizian
- [AMBER] 'process_mdout.perl' script (Sun May 30 2010 - 18:21:50 PDT)
- [AMBER] Dynamic Cross Correlation Map (Tue May 25 2010 - 19:56:57 PDT)
- [AMBER] Dynamic Cross Correlation Map (Sun May 23 2010 - 19:53:46 PDT)
- [AMBER] meaning of time correlation function (Mon May 17 2010 - 20:13:19 PDT)
- [AMBER] reducing number of fram in out data file (Mon May 17 2010 - 19:34:36 PDT)
- [AMBER] How to obtain dialsplot (Tue May 11 2010 - 19:10:59 PDT)
- [AMBER] NTT=3 or NTT=1 (Sun May 09 2010 - 18:11:28 PDT)
- Re: [AMBER] crash in minimization step (Tue May 04 2010 - 21:35:39 PDT)
- [AMBER] TER dfinition at the middile of pdb file (Fri Apr 30 2010 - 17:41:38 PDT)
Hopkins, Robert
- [AMBER] AmberTools-1.4 Test Problem (Mon May 31 2010 - 07:31:53 PDT)
Hoshin Amber
- [AMBER] Positive Etot value (Tue May 18 2010 - 19:55:54 PDT)
- RE: [AMBER] ESP VS AM1BCC (Thu May 13 2010 - 00:51:17 PDT)
- [AMBER] ESP VS AM1BCC (Wed May 12 2010 - 00:12:12 PDT)
- [AMBER] Is it necessary to use Gaussian03? (Mon May 10 2010 - 00:55:10 PDT)
- RE: [AMBER] How to make ionic liquid solvent box? (Wed May 05 2010 - 00:35:34 PDT)
Hoshin Kim
- Re: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 15:41:56 PDT)
- RE: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 14:06:39 PDT)
http://www.cuesportz.com/CueWeb/index.faces?afl=R00004E4
- [AMBER] You're invited with Honour to the ..... http://www.billiardprofile.com (Sat May 08 2010 - 22:11:03 PDT)
- [AMBER] You're invited with Honour to the ..... http://www.billiardprofile.com (Sat May 08 2010 - 22:09:34 PDT)
Hyma vathi
- Re: [AMBER] unable to view grid file of ptraj (Tue May 25 2010 - 10:35:17 PDT)
- [AMBER] unable to view grid file of ptraj (Tue May 25 2010 - 07:42:41 PDT)
- [AMBER] Missing BELE for MM in 1 (residue 1) (Sun May 16 2010 - 22:56:28 PDT)
Ilyas Yildirim
- Re: [AMBER] B-DNA (Wed May 26 2010 - 08:08:50 PDT)
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 08:44:15 PDT)
InSuk Joung
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 08:24:47 PDT)
- Re: [AMBER] Odd softcore potential TI problem (Tue May 18 2010 - 18:48:00 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:51:19 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:50:20 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 11:28:11 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 10:58:05 PDT)
- Re: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 09:49:10 PDT)
- [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 09:27:00 PDT)
- Re: [AMBER] color images from 2drms (Fri May 14 2010 - 09:49:07 PDT)
- Re: [AMBER] problem with targeted md simulation (Fri May 14 2010 - 09:11:54 PDT)
- Re: [AMBER] problem with targeted md simulation (Thu May 13 2010 - 14:14:57 PDT)
- Re: [AMBER] problem with targeted md simulation (Thu May 13 2010 - 12:36:07 PDT)
Jan Schulze
- Re: [AMBER] make test.parallel never finishes (Mon May 17 2010 - 04:43:10 PDT)
- [AMBER] make test.parallel never finishes (Fri May 14 2010 - 07:19:38 PDT)
jani vinod
- [AMBER] remd convergence (Mon May 17 2010 - 23:20:21 PDT)
Jason Swails
- Re: [AMBER] Problem on B-factor Calculation (Mon May 31 2010 - 19:32:41 PDT)
- Re: [AMBER] reg REMD (Mon May 31 2010 - 18:06:21 PDT)
- Re: [AMBER] amber10 installtion error in parallel (Mon May 31 2010 - 17:43:52 PDT)
- Re: [AMBER] CUDA Segfault GTX470 (Mon May 31 2010 - 17:41:16 PDT)
- Re: [AMBER] Prepare the mutants file for ala scanning (Mon May 31 2010 - 17:32:01 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Mon May 31 2010 - 17:29:18 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 11:19:42 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 07:01:03 PDT)
- Re: [AMBER] Parallel installation of AMBER 11 on MacOSX (Mon May 31 2010 - 06:18:59 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Mon May 31 2010 - 06:07:49 PDT)
- Re: [AMBER] How to output partial part of the result in output file (Sun May 30 2010 - 21:35:14 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 20:33:44 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 17:50:38 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 06:32:14 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sat May 29 2010 - 21:00:39 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sat May 29 2010 - 06:55:22 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Fri May 28 2010 - 13:38:25 PDT)
- Re: [AMBER] test run error during compilation of amber10 in linux (Fri May 28 2010 - 07:36:21 PDT)
- Re: [AMBER] Installing AmberTools 1.4 in Ubuntu 10.04 (Thu May 27 2010 - 12:20:41 PDT)
- Re: [AMBER] how to add Mg2+ (Thu May 27 2010 - 11:09:24 PDT)
- Re: [AMBER] what is the meaning of GBSA decompostion results for drug-drug interaction? (Thu May 27 2010 - 06:36:25 PDT)
- Re: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:55:12 PDT)
- Re: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:09:28 PDT)
- Re: [AMBER] Problem about Sander with large system (Wed May 26 2010 - 15:02:26 PDT)
- Re: [AMBER] NUCGEN (Wed May 26 2010 - 07:27:38 PDT)
- Re: [AMBER] Energy minimization OR black art (Wed May 26 2010 - 07:22:05 PDT)
- Re: [AMBER] Can mm_pbsa.pl read NETCDF format trajectory file ? (Wed May 26 2010 - 07:14:40 PDT)
- Re: [AMBER] antechamber (Wed May 26 2010 - 07:00:28 PDT)
- Re: [AMBER] amber (Tue May 25 2010 - 22:25:35 PDT)
- Re: [AMBER] amber (Tue May 25 2010 - 22:21:58 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 16:35:41 PDT)
- Fwd: [AMBER] Problem about Sander with large system (Tue May 25 2010 - 13:46:13 PDT)
- Re: [AMBER] Problem about Sander with large system (Tue May 25 2010 - 08:00:28 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Tue May 25 2010 - 05:21:25 PDT)
- Re: [AMBER] MMPBSA.py.MPI (Tue May 25 2010 - 05:32:37 PDT)
- Re: [AMBER] AMBER (Tue May 25 2010 - 05:04:23 PDT)
- Re: FW: [AMBER] MMPBSA.py update (Mon May 24 2010 - 18:07:34 PDT)
- [AMBER] MMPBSA.py update (Mon May 24 2010 - 15:53:24 PDT)
- Re: [AMBER] help about test failures (Sat May 22 2010 - 18:16:42 PDT)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:14:42 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Fri May 21 2010 - 05:51:43 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 20:45:17 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 19:39:34 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 17:50:31 PDT)
- Re: [AMBER] sander.MPI problem (Thu May 20 2010 - 12:56:41 PDT)
- Re: [AMBER] PMEMD.CUDA on GTS250 (Thu May 20 2010 - 10:40:36 PDT)
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 08:22:53 PDT)
- Re: [AMBER] Ambertools 1.4 installation cygwin (Wed May 19 2010 - 21:19:31 PDT)
- Re: [AMBER] Coordinate arrays in sander (Wed May 19 2010 - 16:42:29 PDT)
- Re: [AMBER] entropy-problem (Tue May 18 2010 - 13:59:28 PDT)
- Re: [AMBER] Contour plots of 2D WHAM (Tue May 18 2010 - 09:42:17 PDT)
- Re: [AMBER] B-factor (Tue May 18 2010 - 05:06:41 PDT)
- Re: [AMBER] amber10 installation error in linux (openmpi error) (Tue May 18 2010 - 05:05:45 PDT)
- Re: [AMBER] entropy-problem (Mon May 17 2010 - 18:43:01 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 13:01:00 PDT)
- Re: [AMBER] tleap problems in Fedora Core 12 (Mon May 17 2010 - 11:54:54 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 11:33:00 PDT)
- Re: [AMBER] amber compilation error (Mon May 17 2010 - 11:08:06 PDT)
- Re: [AMBER] analysis of results (Mon May 17 2010 - 06:38:06 PDT)
- Re: [AMBER] error - binding_energy.mmpbsa run (Sun May 16 2010 - 04:40:22 PDT)
- Re: [AMBER] entropy problem (Sat May 15 2010 - 18:46:27 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 14:45:27 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 14:42:50 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 08:49:42 PDT)
- Re: [AMBER] problems enabling CUDA for Amber 11 on Mac OS X 10.6 (Fri May 14 2010 - 15:12:05 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 15:00:41 PDT)
- Re: [AMBER] problems enabling CUDA for Amber 11 on Mac OS X 10.6 (Fri May 14 2010 - 14:58:43 PDT)
- Re: [AMBER] tleap problems in Fedora Core 12 (Fri May 14 2010 - 14:35:11 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 11:40:23 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 08:41:23 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 14:56:34 PDT)
- Re: [AMBER] Query on the trajectory output in PDB format (Thu May 13 2010 - 07:24:37 PDT)
- Re: [AMBER] color images from 2drms (Thu May 13 2010 - 07:16:14 PDT)
- Re: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 07:10:54 PDT)
- Re: [AMBER] tleap segmentation fault (Wed May 12 2010 - 15:15:01 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 14:19:05 PDT)
- Re: [AMBER] ESP VS AM1BCC (Wed May 12 2010 - 14:11:29 PDT)
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 13:24:26 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 13:01:31 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:30:06 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:20:13 PDT)
- Re: [AMBER] Error while compiling GPU version of PMEMD in Amber 11 (Wed May 12 2010 - 12:14:36 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Wed May 12 2010 - 07:19:15 PDT)
- Re: [AMBER] ESP VS AM1BCC (Wed May 12 2010 - 05:48:49 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Wed May 12 2010 - 05:41:17 PDT)
- Re: [AMBER] pressure not constant (Tue May 11 2010 - 23:04:28 PDT)
- Re: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 21:21:40 PDT)
- Re: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 21:09:55 PDT)
- Re: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 20:28:39 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 20:20:05 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 20:15:55 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 20:14:05 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 16:10:35 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 14:28:36 PDT)
- Re: [AMBER] ESP VS AM1BCC (Tue May 11 2010 - 13:43:09 PDT)
- Re: [AMBER] How to disable the 1-4 interaction (Mon May 10 2010 - 09:34:46 PDT)
- Re: [AMBER] Installation of Amber10 (Mon May 10 2010 - 06:30:34 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sun May 09 2010 - 21:33:43 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 16:06:50 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 06:17:10 PDT)
- Re: [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer? (Fri May 07 2010 - 05:49:29 PDT)
- Re: Re: [AMBER] fsetpos failed on when looking for box coordinates (Fri May 07 2010 - 05:43:06 PDT)
- Re: [AMBER] regarding ambertools (Thu May 06 2010 - 10:42:49 PDT)
- Re: [AMBER] conversion to netcdf format (Thu May 06 2010 - 07:06:08 PDT)
- Re: [AMBER] conversion to netcdf format (Thu May 06 2010 - 06:37:18 PDT)
- Re: [AMBER] Installation of Amber10 (Thu May 06 2010 - 05:52:57 PDT)
- Re: [AMBER] ntpr ntwx too small (Wed May 05 2010 - 07:29:45 PDT)
- Re: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Wed May 05 2010 - 07:27:01 PDT)
- Re: [AMBER] AMBER Wiki (Wed May 05 2010 - 07:03:05 PDT)
- Re: [AMBER] to post amber list (Wed May 05 2010 - 06:54:09 PDT)
- Re: [AMBER] about VMD's molecular surface area calculation (Wed May 05 2010 - 06:51:09 PDT)
- Re: [AMBER] AMBER Wiki (Wed May 05 2010 - 06:32:17 PDT)
- Re: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 15:10:00 PDT)
- Re: [AMBER] question about errors during make install (Tue May 04 2010 - 12:11:02 PDT)
- Re: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Tue May 04 2010 - 08:12:12 PDT)
- Re: [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 06:29:06 PDT)
- Re: [AMBER] Amber with MPI (GNU and Intel) on Mac SL (Tue May 04 2010 - 06:12:39 PDT)
- Re: [AMBER] Amber with MPI (GNU and Intel) on Mac SL (Mon May 03 2010 - 16:09:29 PDT)
- Re: [AMBER] freezing selected residues (Sat May 01 2010 - 15:52:44 PDT)
- Re: [AMBER] Is AMBER 10 compatible with notebook? (Sat May 01 2010 - 08:29:15 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 07:25:29 PDT)
- Re: [AMBER] Installation of Amber10 (Sat May 01 2010 - 07:16:03 PDT)
jaya c.jose
- Re: [AMBER] Installation of Amber10 (Tue May 18 2010 - 08:20:56 PDT)
- Re: [AMBER] Installation of Amber10 (Fri May 14 2010 - 05:59:06 PDT)
- Re: [AMBER] Installation of Amber10 (Mon May 10 2010 - 06:07:56 PDT)
- [AMBER] Installation of Amber10 (Fri May 07 2010 - 23:09:24 PDT)
- Re: [AMBER] Installation of Amber10 (Fri May 07 2010 - 03:25:36 PDT)
- [AMBER] Installation of Amber10 (Thu May 06 2010 - 05:22:10 PDT)
- [AMBER] Installation of Amber10 (Sat May 01 2010 - 07:02:12 PDT)
Jayalakshmi Sridhar
- [AMBER] radius of gyration in ptraj (Mon May 24 2010 - 11:30:06 PDT)
- Re: [AMBER] Ptraj image problems (Thu May 13 2010 - 08:40:50 PDT)
- Re: [AMBER] Ptraj image problems (Thu May 13 2010 - 08:40:00 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 13:23:10 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 13:19:22 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 13:07:28 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:56:42 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 12:18:35 PDT)
- [AMBER] Ptraj image problems (Wed May 12 2010 - 11:26:26 PDT)
Jeffrey
- [AMBER] non-standard residue parameters (Thu May 13 2010 - 07:09:01 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 08:45:37 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 05:44:54 PDT)
- [AMBER] How to disable the VDW interaction? (Fri May 07 2010 - 23:51:02 PDT)
Jerome Golebiowski
- RE: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 02:58:48 PDT)
- Re: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 01:24:54 PDT)
Jianyin Shao
- Re: [AMBER] Davies Bouldin Index with DME in ptraj (Mon May 10 2010 - 16:10:05 PDT)
Jignesh Patel
- Re: [AMBER] amber10 installtion error in parallel (Mon May 31 2010 - 21:25:25 PDT)
Jim Miller
- [AMBER] How to output partial part of the result in output file (Sun May 30 2010 - 21:07:41 PDT)
- Re: [AMBER] Defunction of ibelly in Sander (Sun May 30 2010 - 20:55:45 PDT)
- [AMBER] Defunction of ibelly in Sander (Sun May 30 2010 - 10:25:26 PDT)
Jio M
- [AMBER] discontinous residues (Mon May 31 2010 - 23:58:27 PDT)
Jiri Sponer
- Re: [AMBER] regarding K+ ions (Thu May 27 2010 - 23:28:31 PDT)
John S
- Re: [AMBER] equilibration (Thu May 20 2010 - 20:16:17 PDT)
- [AMBER] equilibration (Wed May 19 2010 - 11:05:03 PDT)
JoRDi
- [AMBER] Solvate box (Wed May 26 2010 - 05:07:26 PDT)
- Re: [AMBER] antechamber (Wed May 26 2010 - 02:00:44 PDT)
Jose Borreguero
- Re: [AMBER] writing in ptraj a new action requiring prior knowledge of the average coordinates (Mon May 24 2010 - 20:22:06 PDT)
- Re: [AMBER] writing in ptraj a new action requiring prior knowledge of the average coordinates (Mon May 24 2010 - 18:39:54 PDT)
- [AMBER] writing in ptraj a new action requiring prior knowledge of the average coordinates (Mon May 24 2010 - 17:41:33 PDT)
- Re: [AMBER] parsing expressions in the radial function of ptraj (Fri May 07 2010 - 08:59:23 PDT)
- [AMBER] parsing expressions in the radial function of ptraj (Thu May 06 2010 - 18:41:27 PDT)
Josh Berryman
- [AMBER] Re: serial TI with ifsc = 2 and icfe = 0 (Mon May 03 2010 - 10:31:13 PDT)
- [AMBER] serial TI with ifsc = 2 and icfe = 0 (Mon May 03 2010 - 04:08:59 PDT)
Josmar R. da Rocha
- Re: [AMBER] PMEMD.CUDA on GTS250 (Thu May 20 2010 - 11:19:36 PDT)
- [AMBER] PMEMD.CUDA on GTS250 (Thu May 20 2010 - 10:29:35 PDT)
Juan Carlos
- [AMBER] DIPOLE MOMENT OF HEPARAN SULPHATE MODELS (Wed May 26 2010 - 01:16:53 PDT)
- [AMBER] DIPOLE MOMENT OUTPUT FILE (Thu May 13 2010 - 07:34:47 PDT)
kamlesh sahu
- [AMBER] parameters for MSE (selenomethionine) (Thu May 20 2010 - 01:26:59 PDT)
- Re: [AMBER] about mpirun in AMBER (Sun May 09 2010 - 21:37:47 PDT)
- [AMBER] about mpirun in AMBER (Sun May 09 2010 - 17:22:39 PDT)
Katrina Lexa
- [AMBER] checkgrid command rdparm (Thu May 06 2010 - 14:53:18 PDT)
Kensuke Nakamura
- Re: [AMBER] AMBER10 installation on OSX (Fri May 21 2010 - 17:17:57 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 20:24:30 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 18:55:51 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 17:44:28 PDT)
- [AMBER] AMBER10 installation on OSX (Wed May 19 2010 - 22:07:49 PDT)
Kevin Hauser
- Re: [AMBER] a recent review about force fields (Wed May 12 2010 - 09:45:25 PDT)
Lachele Foley (Lists)
- Re: [AMBER] leap issues (Fri May 21 2010 - 10:26:56 PDT)
- Re: [AMBER] How to obtain interdomain angles (Tue May 18 2010 - 13:08:38 PDT)
- Re: [AMBER] Kirkwood g factor (Tue May 04 2010 - 10:58:21 PDT)
Lalit Dubey
- Re: [AMBER] 1,2 -dichloroethane solvent model (Sun May 23 2010 - 21:23:20 PDT)
- [AMBER] 1,2 -dichloroethane solvent model (Wed May 19 2010 - 21:35:53 PDT)
Lekpa Duukori
- Re: [AMBER] Contour plots of 2D WHAM (Tue May 18 2010 - 14:17:47 PDT)
- [AMBER] Contour plots of 2D WHAM (Tue May 18 2010 - 07:43:10 PDT)
- Re: [AMBER] NaNs in wham analysis (Wed May 05 2010 - 14:25:58 PDT)
- Re: [AMBER] NaNs in wham analysis (Wed May 05 2010 - 12:32:33 PDT)
- [AMBER] NaNs in wham analysis (Wed May 05 2010 - 11:37:15 PDT)
Levi Pierce
- [AMBER] CUDA Segfault GTX470 (Mon May 31 2010 - 15:24:18 PDT)
- Re: [AMBER] Installing AmberTools 1.4 in Ubuntu 10.04 (Thu May 27 2010 - 14:08:25 PDT)
- Re: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:22:04 PDT)
- Re: [AMBER] NUCGEN (Wed May 26 2010 - 10:18:54 PDT)
- Re: [AMBER] amber (Tue May 25 2010 - 22:24:37 PDT)
liu junjun
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 13:11:52 PDT)
- [AMBER] skinnb and energy conservation (Wed May 12 2010 - 09:39:18 PDT)
luzhenw1.msu.edu
- Re: [AMBER] nmr order parameter and autocorrelation (Mon May 03 2010 - 18:56:36 PDT)
- Re: [AMBER] nmr order parameter and autocorrelation (Mon May 03 2010 - 12:29:52 PDT)
M. L. Dodson
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 09:03:24 PDT)
M. Reza Ganjalikhany
- [AMBER] Is it possible to plot RMSd VS residue number for a protein? (Mon May 31 2010 - 06:49:48 PDT)
- Re: [AMBER] Energy minimization OR black art (Wed May 26 2010 - 06:29:01 PDT)
- [AMBER] Energy minimization OR black art (Wed May 26 2010 - 05:41:45 PDT)
manikanthan bhavaraju
- Re: [AMBER] TI Job crashes at some lambda values during heating (Tue May 25 2010 - 08:35:45 PDT)
- Re: [AMBER] TI Job crashes at some lambda values during heating (Mon May 24 2010 - 17:50:47 PDT)
- Re: [AMBER] TI Job crashes at some lambda values during heating (Sat May 22 2010 - 20:47:19 PDT)
- Re: [AMBER] sander and ptraj problem (Thu May 13 2010 - 10:26:45 PDT)
- Re: [AMBER] sander and ptraj problem (Thu May 13 2010 - 08:42:01 PDT)
- Re: [AMBER] sander and ptraj problem (Wed May 12 2010 - 16:00:20 PDT)
- Re: [AMBER] sander and ptraj problem (Wed May 12 2010 - 15:04:58 PDT)
- [AMBER] sander and ptraj problem (Wed May 12 2010 - 14:49:32 PDT)
map110.pitt.edu
- Re: [AMBER] problem with targeted md simulation (Fri May 14 2010 - 10:59:09 PDT)
- Re: [AMBER] problem with targeted md simulation (Fri May 14 2010 - 08:05:45 PDT)
- Re: [AMBER] problem with targeted md simulation (Thu May 13 2010 - 13:30:24 PDT)
- [AMBER] problem with targeted md simulation (Thu May 13 2010 - 12:19:36 PDT)
Marc Moreau
- [AMBER] Amber 11 SRPM? (Thu May 27 2010 - 14:05:39 PDT)
Marek Maly
- [AMBER] RDF of centers of masses ? (Fri May 21 2010 - 07:33:07 PDT)
- Re: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Sat May 15 2010 - 04:45:48 PDT)
- [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 06:31:48 PDT)
- Re: [AMBER] How to disable the VDW interaction? (Sat May 08 2010 - 14:58:19 PDT)
Massimiliano Bonomi
- [AMBER] PLUMED release 1.2.0 available (Tue May 18 2010 - 04:45:02 PDT)
Matthew Tessier
- [AMBER] Calculating Self-Diffusion Coefficients (Fri May 21 2010 - 11:13:34 PDT)
- RE: [AMBER] ESP VS AM1BCC (Wed May 12 2010 - 15:37:38 PDT)
matthew_seetin.urmc.rochester.edu
- RE: [AMBER] distance restraint (Tue May 25 2010 - 21:57:17 PDT)
Matthias Negri
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Thu May 06 2010 - 15:29:12 PDT)
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Thu May 06 2010 - 13:11:55 PDT)
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Wed May 05 2010 - 16:45:29 PDT)
- [AMBER] [Fwd: MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT)] (Wed May 05 2010 - 03:47:24 PDT)
- [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Wed May 05 2010 - 03:17:45 PDT)
Mengjuei Hsieh
- Re: [AMBER] Amber 11 SRPM? (Thu May 27 2010 - 17:18:43 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Thu May 27 2010 - 02:02:41 PDT)
- Re: [AMBER] Setting Atom Types (Thu May 27 2010 - 01:45:05 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Sat May 22 2010 - 13:17:32 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Sat May 22 2010 - 12:38:30 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Sat May 22 2010 - 02:02:14 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Fri May 21 2010 - 22:49:18 PDT)
- Re: [AMBER] reducing number of fram in out data file (Fri May 21 2010 - 14:59:06 PDT)
- Re: [AMBER] meaning of time correlation function (Fri May 21 2010 - 14:48:38 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Fri May 21 2010 - 10:55:19 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 22:53:04 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Thu May 20 2010 - 01:31:12 PDT)
- Re: [AMBER] AMBER10 installation on OSX (Thu May 20 2010 - 01:26:36 PDT)
- Re: [AMBER] explanation for three rdf files (Thu May 20 2010 - 01:10:01 PDT)
- Re: [AMBER] AT1.4 installation errors (logs are attached) (Wed May 19 2010 - 10:17:02 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 15:45:33 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 12:56:20 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 11:02:54 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 09:44:47 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Sun May 16 2010 - 13:13:37 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sun May 16 2010 - 04:04:35 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 21:25:29 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 11:25:18 PDT)
- Re: [AMBER] installation on MacOS10.6 (Thu May 13 2010 - 15:58:30 PDT)
- Re: [AMBER] Question about running AMBER on a mac (Tue May 04 2010 - 11:32:57 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 15:39:05 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 10:13:14 PDT)
- Re: [AMBER] ambertools 1.4, tests (Mon May 03 2010 - 03:02:52 PDT)
- Re: [AMBER] AmberTools.pdf (AT 1.4) (Sun May 02 2010 - 02:52:22 PDT)
- Re: [AMBER] ambertools 1.4, tests (Sun May 02 2010 - 02:47:53 PDT)
- Re: [AMBER] xgrid in opempi 1.4.1 still broken (Sat May 01 2010 - 18:49:50 PDT)
- Re: [AMBER] AmberTool 1.4 with Intel 10.1.014 on snow leopard (Sat May 01 2010 - 18:33:53 PDT)
- Re: [AMBER] Undefined symbols: "___builtin___strcpy_chk" and more (Sat May 01 2010 - 18:23:06 PDT)
Mirko Cestari
- Re: [AMBER] installing AmberTools 1.4 on AIX (Mon May 31 2010 - 06:57:52 PDT)
- [AMBER] installing AmberTools 1.4 on AIX (Wed May 26 2010 - 06:16:38 PDT)
mish
- [AMBER] Production run for MM/PBSA (Wed May 19 2010 - 07:27:54 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Sat May 08 2010 - 03:55:05 PDT)
- Re: [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Thu May 06 2010 - 05:56:50 PDT)
- [AMBER] after equil surface of octahedral water-box have small well shaped arrangement of water (Thu May 06 2010 - 05:00:49 PDT)
- [AMBER] Amber 11- updated scripts for constant pH simulations and for MMPB/SA (Wed May 05 2010 - 05:20:33 PDT)
missing_grace.sina.com
- [AMBER] antechamber (Tue May 25 2010 - 22:08:53 PDT)
- [AMBER] amber (Tue May 25 2010 - 21:59:02 PDT)
- [AMBER] antechamber (Tue May 25 2010 - 21:57:27 PDT)
monica.imtech.res.in
- [AMBER] B-DNA (Wed May 26 2010 - 04:18:02 PDT)
- [AMBER] NUCGEN (Wed May 26 2010 - 04:10:02 PDT)
Navanath Kumbhar
- [AMBER] to post amber list (Wed May 05 2010 - 05:22:25 PDT)
Necmettin Pirinccioglu
- Re: [AMBER] Chloroform solvent model (Tue May 18 2010 - 01:34:51 PDT)
Nicee
- [AMBER] amber 10 parallel test run error (Sun May 30 2010 - 21:33:11 PDT)
- Re: [AMBER] Atom out of bounds/prepin file problem (Tue May 25 2010 - 00:01:49 PDT)
- Re: [AMBER] Atom out of bounds/prepin file problem (Mon May 24 2010 - 23:06:46 PDT)
- [AMBER] Atom out of bounds/prepin file problem (Mon May 24 2010 - 02:55:48 PDT)
- [AMBER] (no subject) (Mon May 24 2010 - 02:54:01 PDT)
nicholus bhattacharjee
- [AMBER] Query on the trajectory output in PDB format (Thu May 13 2010 - 06:15:17 PDT)
Niel Henriksen
- RE: [AMBER] How to obtain dialsplot (Wed May 12 2010 - 09:11:44 PDT)
Oliver Kuhn
- Re: [AMBER] MBAR on TI data (Tue May 04 2010 - 22:55:41 PDT)
- [AMBER] MBAR on TI data (Tue May 04 2010 - 01:32:29 PDT)
Omair A. Khan
- Re: [AMBER] tleap problems in Fedora Core 12 (Mon May 17 2010 - 11:49:24 PDT)
- Re: [AMBER] tleap segmentation fault (Wed May 12 2010 - 14:57:17 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 14:27:41 PDT)
- Re: [AMBER] tleap segmentation fault (Tue May 11 2010 - 12:55:26 PDT)
- [AMBER] tleap segmentation fault (Tue May 11 2010 - 06:19:43 PDT)
- [AMBER] tleap segmentation fault (Mon May 10 2010 - 15:23:53 PDT)
Paul Brandt
- RE: [AMBER] minimization with pmemd and gbsa=1 (Fri May 21 2010 - 02:27:30 PDT)
- [AMBER] minimization with pmemd and gbsa=1 (Fri May 21 2010 - 00:19:11 PDT)
Paul S. Nerenberg
- Re: [AMBER] Odd softcore potential TI problem (Tue May 18 2010 - 19:14:49 PDT)
- [AMBER] Odd softcore potential TI problem (Tue May 18 2010 - 18:24:11 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 13:53:44 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 10:47:38 PDT)
- Re: PROGRESS! [AMBER] installation on MacOS10.6 (Mon May 17 2010 - 09:34:09 PDT)
- Re: [AMBER] installation on MacOS10.6 (Sat May 15 2010 - 08:54:43 PDT)
peikun
- [AMBER] External Electric Field (Tue May 18 2010 - 20:32:04 PDT)
peker milas
- Re: [AMBER] help about test failures (Sat May 22 2010 - 17:28:51 PDT)
- Re: [AMBER] help about test failures (Fri May 21 2010 - 15:50:51 PDT)
- [AMBER] help about test failures (Fri May 21 2010 - 13:32:34 PDT)
- Re: [AMBER] sander.MPI problem (Fri May 21 2010 - 12:33:53 PDT)
- Re: [AMBER] sander.MPI problem (Fri May 21 2010 - 12:30:29 PDT)
- Re: [AMBER] sander.MPI problem (Fri May 21 2010 - 05:47:45 PDT)
- Re: [AMBER] sander.MPI problem (Thu May 20 2010 - 13:22:26 PDT)
- [AMBER] sander.MPI problem (Thu May 20 2010 - 12:19:07 PDT)
- Re: [q4md-fft] Re: [AMBER] esp and resp with pcgamess (Fri May 07 2010 - 09:59:03 PDT)
- [AMBER] esp and resp with pcgamess (Fri May 07 2010 - 05:58:03 PDT)
piotrek.vega.umcs.lublin.pl
- [AMBER] SPC/E and TIP3P water models (Tue May 11 2010 - 10:19:12 PDT)
pxq
- Re: Re: [AMBER] how to get decomposed energies of every snapshot (Thu May 06 2010 - 17:30:26 PDT)
- [AMBER] how to get decomposed energies of every snapshot (Thu May 06 2010 - 06:56:39 PDT)
Qian Wang
- [AMBER] writing mode (Tue May 25 2010 - 12:59:34 PDT)
qiaoyan
- [AMBER] distance restraint (Tue May 25 2010 - 19:58:07 PDT)
- [AMBER] installation of amber (Sun May 09 2010 - 18:44:11 PDT)
Ray Luo
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Thu May 06 2010 - 14:45:06 PDT)
Ray Luo, Ph.D.
- Re: [AMBER] MM-PBSA problem.. large delta (PBTOT, GAS, VdW, INT) (Wed May 05 2010 - 17:39:27 PDT)
Rebeca García Fandiño
- RE: [AMBER] color images from 2drms (Thu May 20 2010 - 08:18:00 PDT)
- [AMBER] color images from 2drms (Thu May 13 2010 - 02:33:54 PDT)
Richard Owczarzy
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:52:57 PDT)
Rilei Yu
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 22:25:30 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 18:59:28 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sun May 30 2010 - 17:26:28 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sat May 29 2010 - 22:28:22 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sat May 29 2010 - 20:09:13 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Sat May 29 2010 - 04:21:31 PDT)
- Re: [AMBER] MMPBSA.py update install problem (Thu May 27 2010 - 23:21:49 PDT)
- [AMBER] MMPBSA.py update install problem (Mon May 24 2010 - 22:56:24 PDT)
- Re: [AMBER] entropy-problem (Tue May 18 2010 - 18:50:20 PDT)
- Re: [AMBER] entropy-problem (Tue May 18 2010 - 06:10:31 PDT)
- [AMBER] entropy-problem (Mon May 17 2010 - 18:29:51 PDT)
- Re: [AMBER] entropy problem (Sat May 15 2010 - 19:16:44 PDT)
- [AMBER] entropy problem (Sat May 15 2010 - 18:13:55 PDT)
- Re: [AMBER] molecular dynamics set up (Tue May 04 2010 - 17:06:44 PDT)
- Re: [AMBER] molecular dynamics set up (Mon May 03 2010 - 17:49:31 PDT)
- [AMBER] molecular dynamics set up (Mon May 03 2010 - 16:36:06 PDT)
- [AMBER] molecular dynamics set up (Sun May 02 2010 - 16:58:40 PDT)
- [AMBER] md simulation-cap (Sun May 02 2010 - 05:40:16 PDT)
- Re: [AMBER] Problem from ala scanning (Fri Apr 30 2010 - 16:42:16 PDT)
- Re: [AMBER] Problem from ala scanning (Fri Apr 30 2010 - 15:58:37 PDT)
RINU KHATTRI
- [AMBER] [Fwd: problem in bond connection] (Tue May 11 2010 - 05:43:42 PDT)
rivalta.unical.it
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Wed May 26 2010 - 07:28:07 PDT)
- Re: [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 17:34:36 PDT)
- [AMBER] personalized addition of H atoms in proteins with tleap (Tue May 25 2010 - 16:14:08 PDT)
Robert Duke
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 10:11:51 PDT)
- Re: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 09:50:38 PDT)
- Re: [AMBER] size of real (Sun May 02 2010 - 12:05:11 PDT)
- Re: [AMBER] size of real (Sun May 02 2010 - 05:31:47 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 20:16:55 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 15:33:44 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 07:39:59 PDT)
Robert Elder
- Re: [AMBER] Square planar complex and improper torsions (Wed May 26 2010 - 16:40:19 PDT)
- Re: [AMBER] Square planar complex and improper torsions (Tue May 25 2010 - 09:01:54 PDT)
- [AMBER] Square planar complex and improper torsions (Mon May 24 2010 - 16:36:47 PDT)
- Re: [AMBER] Is the results of NAMD equals to AMBER's sander? (Mon May 24 2010 - 12:49:31 PDT)
- Re: [AMBER] unsubscribe (Thu May 06 2010 - 05:34:45 PDT)
Roman Osman
- Re: [AMBER] color images from 2drms (Thu May 20 2010 - 09:23:18 PDT)
Ross Walker
- RE: [AMBER] CUDA Segfault GTX470 (Mon May 31 2010 - 16:35:15 PDT)
- RE: [AMBER] 'process_mdout.perl' script (Mon May 31 2010 - 16:15:20 PDT)
- RE: [AMBER] Defunction of ibelly in Sander (Sun May 30 2010 - 11:55:03 PDT)
- RE: [AMBER] amber11 PMEMD cuda problem. (sometimes stopped...) (Thu May 27 2010 - 20:32:57 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:03:32 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:01:05 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:40:25 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:36:43 PDT)
- RE: [AMBER] Energy minimization OR black art (Wed May 26 2010 - 08:44:57 PDT)
- RE: [AMBER] writing in ptraj a new action requiring prior knowledge of the average coordinates (Mon May 24 2010 - 18:25:25 PDT)
- RE: [AMBER] minimization with pmemd and gbsa=1 (Fri May 21 2010 - 07:20:48 PDT)
- RE: [AMBER] PMEMD.CUDA on GTS250 (Thu May 20 2010 - 14:31:27 PDT)
- RE: [AMBER] Compiling MPI and CUDA on Amber 11 (Tue May 18 2010 - 08:47:37 PDT)
- RE: [AMBER] Installation of Amber10 (Tue May 18 2010 - 08:34:27 PDT)
- RE: [AMBER] solvent MD - poor equilibration (Tue May 18 2010 - 08:30:45 PDT)
- RE: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 13:26:10 PDT)
- RE: [AMBER] QMMM and Thermodynamic integration (Mon May 17 2010 - 09:45:34 PDT)
- RE: [AMBER] make test.parallel never finishes (Mon May 17 2010 - 09:18:53 PDT)
- RE: [AMBER] Installation of Amber10 (Fri May 14 2010 - 09:21:39 PDT)
- RE: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 09:45:37 PDT)
- RE: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 20:07:07 PDT)
- RE: [AMBER] Error while compiling GPU version of PMEMD in Amber 11 (Wed May 12 2010 - 12:23:25 PDT)
- RE: [AMBER] pressure not constant (Wed May 12 2010 - 07:25:31 PDT)
- RE: [AMBER] PMEMD installation with gfortran (Wed May 12 2010 - 07:22:46 PDT)
- RE: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 21:19:32 PDT)
- RE: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 21:09:49 PDT)
- RE: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 20:19:55 PDT)
- RE: [AMBER] Installation of Amber10 (Mon May 10 2010 - 07:19:28 PDT)
- RE: [AMBER] about mpirun in AMBER (Sun May 09 2010 - 19:38:01 PDT)
- RE: [AMBER] installation of amber (Sun May 09 2010 - 19:30:50 PDT)
- RE: [AMBER] NTT=3 or NTT=1 (Sun May 09 2010 - 19:28:42 PDT)
- RE: [AMBER] ntpr ntwx too small (Wed May 05 2010 - 07:29:55 PDT)
- RE: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Wed May 05 2010 - 07:27:25 PDT)
- RE: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Tue May 04 2010 - 08:02:42 PDT)
- [AMBER] RE: about xleap parameter files (Tue May 04 2010 - 06:31:12 PDT)
- RE: [AMBER] Is AMBER 10 compatible with notebook? (Sat May 01 2010 - 08:32:09 PDT)
Samuel Genheden
- Re: [AMBER] nmr order parameter and autocorrelation (Mon May 03 2010 - 21:59:53 PDT)
- Re: [AMBER] nmr order parameter and autocorrelation (Fri Apr 30 2010 - 22:55:59 PDT)
Samuel, Tabitha Kripa
- [AMBER] Compiling MPI and CUDA on Amber 11 (Tue May 18 2010 - 08:36:43 PDT)
- [AMBER] Error while compiling GPU version of PMEMD in Amber 11 (Wed May 12 2010 - 11:42:42 PDT)
Sangita Kachhap
- [AMBER] amber10 installtion error in parallel (Mon May 31 2010 - 10:35:35 PDT)
- [AMBER] test run error in amber10 installation (Sat May 29 2010 - 04:12:22 PDT)
- [AMBER] test run error during compilation of amber10 in linux (Fri May 28 2010 - 07:11:55 PDT)
- Re: [AMBER] how to add Mg2+ (Fri May 28 2010 - 06:59:48 PDT)
- Re: [AMBER] how to add Mg2+ (Fri May 28 2010 - 06:58:38 PDT)
- Re: [AMBER] how to add Mg2+ (Fri May 28 2010 - 06:56:39 PDT)
- [AMBER] how to add Mg2+ (Thu May 27 2010 - 10:21:53 PDT)
- Re: [AMBER] amber10 installation error in linux (openmpi error) (Mon May 17 2010 - 23:10:33 PDT)
- [AMBER] amber10 installation error in linux (Mon May 17 2010 - 21:03:33 PDT)
- [AMBER] amber compilation error (Mon May 17 2010 - 08:58:00 PDT)
Sasha Buzko
- [AMBER] pmemd.cuda segmentation fault with iwrap=1 on NVT/NVE (Fri May 28 2010 - 09:39:46 PDT)
- Re: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 15:35:26 PDT)
- [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 14:09:18 PDT)
Scott Brozell
- [AMBER] Announcement: Release of DOCK 6.4 (Tue May 04 2010 - 18:44:53 PDT)
Scott Le Grand
- RE: [AMBER] pmemd.cuda segmentation fault with iwrap=1 on NVT/NVE (Fri May 28 2010 - 13:00:42 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:18:09 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:17:19 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:16:32 PDT)
- RE: [AMBER] CPU core requirements for GPU Amber? (Wed May 26 2010 - 16:15:01 PDT)
- RE: [AMBER] PMEMD.CUDA on GTS250 (Thu May 20 2010 - 10:37:34 PDT)
- RE: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 11:46:38 PDT)
- RE: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 11:41:06 PDT)
- RE: [AMBER] AMBER SUPPORT FOR ATI GPUs ? (Thu May 13 2010 - 11:40:21 PDT)
- RE: [AMBER] skinnb and energy conservation (Wed May 12 2010 - 17:27:47 PDT)
- RE: [AMBER] MAC version of the GTX 285 and PMEMD.CUDA (Wed May 05 2010 - 09:23:13 PDT)
- RE: [AMBER] size of real (Sun May 02 2010 - 12:11:58 PDT)
- RE: [AMBER] size of real (Sun May 02 2010 - 11:17:07 PDT)
Senthil Natesan
- Re: [AMBER] Installation of Amber10 (Tue May 18 2010 - 08:38:40 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Tue May 18 2010 - 07:17:03 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 18:33:10 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 15:57:01 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 13:14:59 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 12:12:07 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 10:34:56 PDT)
- Re: [AMBER] solvent MD - poor equilibration (Mon May 17 2010 - 06:46:25 PDT)
- [AMBER] solvent MD - poor equilibration (Fri May 14 2010 - 12:31:48 PDT)
- Re: [AMBER] PMEMD installation with gfortran - solved ! (Wed May 12 2010 - 08:12:01 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Wed May 12 2010 - 06:58:11 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 18:38:05 PDT)
- [AMBER] PMEMD installation with gfortran (Tue May 11 2010 - 15:13:46 PDT)
- Re: [AMBER] use of "ambmask" ? & freezing selected residues (Tue May 04 2010 - 14:23:32 PDT)
- [AMBER] use of "ambmask" ? (Mon May 03 2010 - 08:52:51 PDT)
Sergey Samsonov
- [AMBER] Dipoles calculation (Tue May 25 2010 - 07:17:03 PDT)
Seungyeul Yoo
- Re: [AMBER] ntx value for MMPBSA normal mode analysis (Tue May 18 2010 - 15:53:40 PDT)
- Re: [AMBER] ntx value for MMPBSA normal mode analysis (Tue May 18 2010 - 15:31:03 PDT)
- [AMBER] ntx value for MMPBSA normal mode analysis (Tue May 18 2010 - 15:11:45 PDT)
shamoon siddiqui
- Re: [AMBER] regarding H-bond & torsion angles (Sat May 15 2010 - 00:31:35 PDT)
- Re: [AMBER] regarding H-bond & torsion angles (Fri May 14 2010 - 22:37:46 PDT)
Sidney Elmer
- Re: [q4md-fft] Re: [AMBER] viewing resp esout files (Fri May 14 2010 - 23:29:50 PDT)
- Re: [AMBER] installation on MacOS10.6 (Fri May 14 2010 - 23:22:35 PDT)
- Re: [AMBER] PMEMD installation with gfortran (Fri May 14 2010 - 22:57:11 PDT)
- [AMBER] viewing resp esout files (Mon May 10 2010 - 20:30:04 PDT)
sjn_sk.hotmail.com
- [AMBER] subscribe (Wed May 12 2010 - 21:33:28 PDT)
sop dadoun
- Re: [AMBER] size of real (Sat May 01 2010 - 15:14:57 PDT)
- [AMBER] size of real (Sat May 01 2010 - 06:03:59 PDT)
- [AMBER] Size of real (Sat May 01 2010 - 06:02:34 PDT)
steinbrt.rci.rutgers.edu
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 06:03:32 PDT)
- Re: [AMBER] Energy minimization OR black art (Wed May 26 2010 - 05:57:10 PDT)
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 04:49:19 PDT)
- Re: [AMBER] B-DNA (Wed May 26 2010 - 04:45:20 PDT)
- Re: [AMBER] umbrella sampling method or steered MD should be used? (Thu May 20 2010 - 00:41:56 PDT)
- Re: [AMBER] Chloroform solvent model (Tue May 18 2010 - 00:55:56 PDT)
- Re: [AMBER] MBAR on TI data (Tue May 04 2010 - 23:42:21 PDT)
- Re: [AMBER] MBAR on TI data (Tue May 04 2010 - 02:16:33 PDT)
Steve Constable
- [AMBER] problems enabling CUDA for Amber 11 on Mac OS X 10.6 (Fri May 14 2010 - 13:16:58 PDT)
Steve Henderson
- [AMBER] Ambertools 1.4 installation cygwin (Wed May 19 2010 - 20:34:38 PDT)
Steve Seibold
- RE: [AMBER] AMBER Wiki (Wed May 05 2010 - 06:53:59 PDT)
- RE: [AMBER] RE: AMBER Wiki (Wed May 05 2010 - 06:32:50 PDT)
- [AMBER] AMBER Wiki (Wed May 05 2010 - 05:38:46 PDT)
Sun, Yufang
- RE: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 10:02:21 PDT)
- RE: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 09:32:55 PDT)
- RE: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 08:26:56 PDT)
- [AMBER] protein moves out of the box when using ptraj center image (Tue May 11 2010 - 16:52:23 PDT)
sunita gupta
- Re: [AMBER] TI Job crashes at some lambda values during heating (Mon May 24 2010 - 23:43:57 PDT)
- Re: [AMBER] TI Job crashes at some lambda values during heating (Mon May 24 2010 - 03:14:43 PDT)
- [AMBER] TI Job crashes at some lambda values during heating (Sat May 22 2010 - 05:20:52 PDT)
- [AMBER] Query regarding Distance Restraints (Thu May 13 2010 - 01:17:35 PDT)
Sushil Mishra
- [AMBER] MM-PB/SA (ERROR IN SETPAR() upon atom distribution) (Sun May 30 2010 - 11:21:28 PDT)
- [AMBER] Can mm_pbsa.pl read NETCDF format trajectory file ? (Wed May 26 2010 - 06:36:17 PDT)
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 06:26:08 PDT)
- Re: [AMBER] TI using soft-core potential (Wed May 26 2010 - 04:55:00 PDT)
- [AMBER] TI using soft-core potential (Wed May 26 2010 - 02:54:07 PDT)
- Re: [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer? (Fri May 07 2010 - 03:19:17 PDT)
- Re: [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer? (Fri May 07 2010 - 03:13:06 PDT)
Syed Tarique Moin
- Re: [AMBER] compiling problem, (Fri May 21 2010 - 18:49:21 PDT)
- Re: [AMBER] compiling problem, (Fri May 21 2010 - 12:09:39 PDT)
- [AMBER] compiling problem, (Fri May 21 2010 - 05:52:16 PDT)
Tan Yaw Sing
- [AMBER] How to obtain interdomain angles (Mon May 17 2010 - 23:30:38 PDT)
Thomas Cheatham
- Re: [AMBER] protein moves out of the box when using ptraj center image (Wed May 12 2010 - 09:40:28 PDT)
Thomas Cheatham III
- Re: [AMBER] How to interpret ptraj clustering results (Wed May 26 2010 - 10:54:57 PDT)
- [AMBER] Reply on closest waters problem (Wed May 26 2010 - 10:21:51 PDT)
- Re: [AMBER] AMBER (will two K+ ions retain their numbering?) (Tue May 25 2010 - 08:40:33 PDT)
- Re: [AMBER] unable to view grid file of ptraj (Tue May 25 2010 - 08:29:24 PDT)
- Re: [AMBER] color images from 2drms (Fri May 14 2010 - 09:03:19 PDT)
- Re: [AMBER] Ptraj image problems (Wed May 12 2010 - 13:06:06 PDT)
- Re: [AMBER] conversion to netcdf format (Thu May 06 2010 - 13:08:23 PDT)
Thomas Patko
- Re: [AMBER] problems enabling CUDA for Amber 11 on Mac OS X 10.6 (Fri May 14 2010 - 15:03:48 PDT)
tianyuan meng
- [AMBER] Problem on Running Shell Script (Mon May 24 2010 - 02:38:54 PDT)
- Re: [AMBER] problem on running saveAmberParm (Sun May 09 2010 - 19:11:47 PDT)
- Re: [AMBER] problem on running saveAmberParm (Tue May 04 2010 - 02:20:26 PDT)
Tom Joseph
- Re: [AMBER] Is the results of NAMD equals to AMBER's sander? (Mon May 24 2010 - 13:49:38 PDT)
- Re: [AMBER] NTT=3 or NTT=1 (Tue May 11 2010 - 20:40:39 PDT)
- Re: [AMBER] NTT=3 or NTT=1 (Mon May 10 2010 - 10:59:17 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 23:17:42 PDT)
- Re: [AMBER] size of real (Sat May 01 2010 - 16:11:27 PDT)
Tom Williams
- [AMBER] question proximal radial distribution function (Thu May 27 2010 - 19:32:12 PDT)
- Re: [AMBER] Problem about Sander with large system (Wed May 26 2010 - 09:33:06 PDT)
- Re: [AMBER] Problem about Sander with large system (Tue May 25 2010 - 07:55:09 PDT)
- Re: [AMBER] Problem about Sander with large system (Mon May 24 2010 - 20:45:18 PDT)
- [AMBER] Problem about Sander with large system (Mon May 24 2010 - 19:58:53 PDT)
vaibhav dixit
- [AMBER] segmentation fault while loading mol2 file and recompilation issue in antechamber and tleap (Thu May 13 2010 - 03:03:14 PDT)
Waad RHAIEM
- [AMBER] simulations RAMD on serial and parallel version of amber8 (Sun May 09 2010 - 17:17:59 PDT)
- [AMBER] (no subject) (Sun May 09 2010 - 17:13:58 PDT)
William Flak
- [AMBER] FF02EP force field (Sat May 29 2010 - 13:59:14 PDT)
- [AMBER] Thank you all (Mon May 24 2010 - 08:12:39 PDT)
- Re: [AMBER] EP with ff99SB (Sun May 23 2010 - 15:53:02 PDT)
- [AMBER] RESP check (Sun May 23 2010 - 15:03:21 PDT)
- [AMBER] EP with ff99SB (Sun May 23 2010 - 14:46:42 PDT)
- [AMBER] Hybridization state effects (Sun May 16 2010 - 08:01:05 PDT)
- Re: [AMBER] Iodine ESP (Sun May 16 2010 - 07:56:38 PDT)
- [AMBER] Iodine ESP (Thu May 06 2010 - 13:07:55 PDT)
Wookyung Yu
- Re: [AMBER] amber11 PMEMD cuda problem. (sometimes stopped...) (Thu May 27 2010 - 21:57:51 PDT)
- [AMBER] amber11 PMEMD cuda problem. (sometimes stopped...) (Thu May 27 2010 - 19:50:47 PDT)
Xioling Chuang
- [AMBER] adding salt for MM_PBSA (Mon May 03 2010 - 01:53:35 PDT)
xuemeiwang1103
- [AMBER] The lib file (Mon May 24 2010 - 19:23:54 PDT)
- [AMBER] The force field (Fri May 21 2010 - 02:13:14 PDT)
- [AMBER] NMR restraint ? (Wed May 05 2010 - 00:28:44 PDT)
Yue Shi
- [AMBER] Does AMBER10 support REMD with AMOEBA? (Thu May 27 2010 - 15:52:29 PDT)
Yunfen Wang
- Re:Re: [AMBER] fsetpos failed on when looking for box coordinates (Thu May 06 2010 - 23:48:47 PDT)
Yunfen Wang
- [AMBER] explanation for three rdf files (Wed May 19 2010 - 20:19:30 PDT)
- [AMBER] fsetpos failed on when looking for box coordinates (Thu May 06 2010 - 17:57:50 PDT)
- [AMBER] ntpr ntwx too small (Wed May 05 2010 - 07:20:14 PDT)
Yuqin Cai
- [AMBER] interaction free energy between a polycyclic aromatic hydrocarbon covalently linked to DNA and the DNA (Fri May 28 2010 - 11:44:02 PDT)
YuZhihong
- RE: [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Wed May 19 2010 - 09:12:58 PDT)
- [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Tue May 18 2010 - 16:15:38 PDT)
Zhihong Yu
- [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Tue May 18 2010 - 09:26:15 PDT)
- [AMBER] Can I get interaction energy between two motifs in diffrent domains in the same protein through MD simulations? (Tue May 18 2010 - 09:00:33 PDT)
김호신
- [AMBER] How to make ionic liquid solvent box? (Mon May 03 2010 - 12:24:34 PDT)
킹아기돼지
- RE: [AMBER] How to make ionic liquid solvent box? (Tue May 04 2010 - 13:42:20 PDT)

Amber Archive May 2010 by author