Re: [AMBER] Setting Atom Types

From: Mengjuei Hsieh <mjhsieh.gmail.com>
Date: Thu, 27 May 2010 01:45:05 -0700

On Wed, May 26, 2010 at 5:30 AM, case <case.biomaps.rutgers.edu> wrote:
> [Mengjuei: can you try this example on Fedora 12?]

Hi,

I am sorry, I deleted my fedora 12 partition on Monday, however I did
try to load the GLYCAM_06 parameter set on a Fedora 13 virtualbox and
I couldn't even pass through the leaprc.... (Yes, FC13 is out this
week.)

Valgrind test shows some promising hints and I am working on it.

Cheers, 
-- 
Mengjuei
Sourcing: /home/mjhsieh/amber11/dat/leap/cmd/leaprc.GLYCAM_06
Loading parameters: /home/mjhsieh/amber11/dat/leap/parm/Glycam_06g.dat
Reading title:
GLYCAM PARAMETERS (FOR AMBER 8.0, RESP 0.010), COPYRIGHT CCRC 2004
Loading Prep file: /home/mjhsieh/amber11/dat/leap/prep/GLYCAM_06.prep
Loading library: /home/mjhsieh/amber11/dat/leap/lib/GLYCAM_amino_06.lib
amber11/bin/tleap: line 17:  9396 Segmentation fault      (core
dumped) $AMBERHOME/bin/teLeap -I$AMBERHOME/dat/leap/prep
-I$AMBERHOME/dat/leap/lib -I$AMBERHOME/dat/leap/parm
-I$AMBERHOME/dat/leap/cmd $*
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Received on Thu May 27 2010 - 02:00:03 PDT
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