Hi again,
Those test results belong to AmberTools1.2 with Amber10. I compiled
them with gcc(4.4.1)+gfortran on Ubuntu Karmic Koala. I applied all
bugfixes. Configuration and installation steps were just fine. I
couldn't find a complete document for explaining details of those
tests. I mean like if there is a test like jar_multi, what is its
actual function ? or if it fails which package will have a problem on
Amber10? So that was actually the main reason for my question.
Thank you so much
peker milas
On Fri, May 21, 2010 at 2:15 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> What version of AmberTools are you using?
> What compiler are you using and what version?
> How did you configure Amber?
> Did you apply all patches? http://ambermd.org/bugfixes10.html
>
> Also, test output such as this:
>
> possible FAILURE: check gcg.dip.o.dif
> /home/peker/amber10/test/rdc
> 352c352
> < 196 H5'1 DA 7 0.14 0.62 0.96
> ---
>> 196 H5'1 DA 7 0.14 0.63 0.96
> 377c377
> < 512 H5'1 DA 17 0.13 0.62 0.98
> ---
>> 512 H5'1 DA 17 0.13 0.63 0.98
> ---------------------------------------
>
> are typically due to round-off and do not indicate problems with the code.
>
>
> On Fri, May 21, 2010 at 4:32 PM, peker milas <pekermilas.gmail.com> wrote:
>
>> Dear amber users,
>>
>> After amber10 and ambertools installations, i had a couple of test
>> failures. Unfortunately, I m having troubles with understanding of
>> their meanings. If anybody can help me, i ll be grateful.
>>
>> PS: my TEST_FAILURES file is in attachment...
>>
>> regards
>> peker milas
>>
>> _______________________________________________
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>>
>>
>
>
> --
> -------------------------
> Daniel R. Roe
> Postdoctoral Associate
> SAS - Chemistry & Chemical Biology
> 610 Taylor Road
> Piscataway, NJ 08854
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Received on Fri May 21 2010 - 16:00:03 PDT
