Hi all,
I've been having problems loading parameters into leap. I hope this explains the issue:
user.computer:~/opt/amber11/exe$ ./tleap
-I: Adding /opt/amber11/dat/leap/prep to search path.
-I: Adding /opt/amber11/dat/leap/lib to search path.
-I: Adding /opt/amber11/dat/leap/parm to search path.
-I: Adding /opt/amber11/dat/leap/cmd to search path.
Welcome to LEaP!
(no leaprc in search path)
> source leaprc.GLYCAM_06
----- Source: /opt/amber11/dat/leap/cmd/leaprc.GLYCAM_06
----- Source of /opt/amber11/dat/leap/cmd/leaprc.GLYCAM_06 done
Loading parameters: /opt/amber11/dat/leap/parm/GLYCAM_06f.dat
Reading title:
GLYCAM PARAMETERS (FOR AMBER 8.0, RESP 0.010), COPYRIGHT CCRC 2004
Loading Prep file: /opt/amber11/dat/leap/prep/GLYCAM_06.prep
Loading library: /opt/amber11/dat/leap/lib/GLYCAM_amino_06.lib
Segmentation fault
user.computer:~/opt/amber11/exe$
Additionally...
I'm getting errors when I try to set the head and tail atoms of a residue. It tells me it's not an "atom type" when I try to set a particular atom that I know for sure should work. Overall I've reinstalled the program and then even reinstalled linux when that didn't work.
Ideas?
Thanks
--
Alex Boncheff
MSc. Candidate
Department of Chemistry
University of Guelph
Guelph, ON, Canada
N1G 2W1
Office: MacNaughton 233
T: 519-824-4120 x 58111
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Received on Fri May 21 2010 - 10:30:03 PDT
