I think it's time to remove the whole source directory and restart :). The
clean target may not be thorough enough, or a bunch of other issues may be
cropping up. Remove the directory and untar a new copy of it. Also make
sure that gcc -v and gfortran -v are returning what you expect.
Good luck!
Jason
On Mon, May 17, 2010 at 2:30 PM, erik zuiderweg <zuiderwe.umich.edu> wrote:
> Did make clean, ran configure again, and ran make again.
>
> I get the same error on arpack.a and an additional one:
>
> Starting installation of AmberTools, version 1.4 serial at Mon May 17
> 14:20:35 EDT 2010.
> (cd ucpp-1.3 && make install )
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> mem.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> nhash.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> cpp.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> lexer.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> assert.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> macro.c
> gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE
> eval.c
> gcc -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o
> mv ucpp /usr/local/amber11/bin
> (cd byacc && make install )
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o
> closure.o closure.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o error.o
> error.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lalr.o
> lalr.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lr0.o
> lr0.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o main.o
> main.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mkpar.o
> mkpar.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o output.o
> output.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o reader.o
> reader.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o
> skeleton.o skeleton.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symtab.o
> symtab.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o
> verbose.o verbose.c
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o
> warshall.o warshall.c
> mv yacc /usr/local/amber11/bin
> (cd arpack && make install );
> gfortran -c -O3 -mtune=generic -o ivout.o ivout.f
> gfortran -c -O3 -mtune=generic -o dvout.o dvout.f
> gfortran -c -O3 -mtune=generic -o dgetv0.o dgetv0.f
> gfortran -c -O3 -mtune=generic -o dlaqrb.o dlaqrb.f
> gfortran -c -O3 -mtune=generic -o dnaitr.o dnaitr.f
> gfortran -c -O3 -mtune=generic -o dnapps.o dnapps.f
> gfortran -c -O3 -mtune=generic -o dnaup2.o dnaup2.f
> gfortran -c -O3 -mtune=generic -o dnaupd.o dnaupd.f
> gfortran -c -O3 -mtune=generic -o dnconv.o dnconv.f
> gfortran -c -O3 -mtune=generic -o dneigh.o dneigh.f
> gfortran -c -O3 -mtune=generic -o dmout.o dmout.f
> gfortran -c -O3 -mtune=generic -o dneupd.o dneupd.f
> gfortran -c -O3 -mtune=generic -o dngets.o dngets.f
> gfortran -c -O3 -mtune=generic -o dsaitr.o dsaitr.f
> gfortran -c -O3 -mtune=generic -o dsapps.o dsapps.f
> gfortran -c -O3 -mtune=generic -o dsaup2.o dsaup2.f
> gfortran -c -O3 -mtune=generic -o dsaupd.o dsaupd.f
> gfortran -c -O3 -mtune=generic -o dsconv.o dsconv.f
> gfortran -c -O3 -mtune=generic -o dseigt.o dseigt.f
> gfortran -c -O3 -mtune=generic -o dsesrt.o dsesrt.f
> gfortran -c -O3 -mtune=generic -o dseupd.o dseupd.f
> gfortran -c -O3 -mtune=generic -o dsgets.o dsgets.f
> gfortran -c -O3 -mtune=generic -o dsortc.o dsortc.f
> gfortran -c -O3 -mtune=generic -o dsortr.o dsortr.f
> gfortran -c -O3 -mtune=generic -o dstatn.o dstatn.f
> gfortran -c -O3 -mtune=generic -o dstats.o dstats.f
> gfortran -c -O3 -mtune=generic -o dstqrb.o dstqrb.f
> gfortran -c -O3 -mtune=generic -o dsarpack.o dsarpack.f
> dsarpack.f:424.3:
>
> 12 go to 11
> 1
> dsarpack.f:199.15:
>
> go to (12,18) label
> 2
> Warning: Label at (1) is not in the same block as the GOTO statement at (2)
> dsarpack.f:545.3:
>
> 18 go to 17
> 1
> dsarpack.f:199.18:
>
> go to (12,18) label
> 2
> Warning: Label at (1) is not in the same block as the GOTO statement at (2)
> gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -o wallclock.o wallclock.c
> ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o
> dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o
> dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o ds.o dsortc.o dsortr.o
> dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o
> ar: arpack.a is a fat file (use libtool(1) or lipo(1) and ar(1) on it)
> ar: arpack.a: Inappropriate file type or format
> make[1]: *** [arpack.a] Error 1
> make: *** [serial] Error 2
>
>
>
>
> On May 17, 2010, at 2:02 PM, Mengjuei Hsieh wrote:
>
> > On Mon, May 17, 2010 at 10:46 AM, erik zuiderweg <zuiderwe.umich.edu>
> wrote:
> >
> >> Done, and I am OK now with the compilers.
> >> ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o
> dnaup2.o
> >> dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o
> >> dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o
> >> dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o
> >> ar: arpack.a is a fat file (use libtool(1) or lipo(1) and ar(1) on it)
> >> ar: arpack.a: Inappropriate file type or format
> >> make[1]: *** [arpack.a] Error 1
> >> make: *** [serial] Error 2
> >
> >
> > This still means that you need that "make clean" I think.
> >
> > --
> > Mengjuei
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> >
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Mon May 17 2010 - 12:00:05 PDT
