Done your suggestion.
The situation is now worse --- I can't even configure ambertools anymore, let alone compile ...
./configure gnu
Your AMBERHOME environment variable should be set to /usr/local/amber11
Obtaining the gnu suite version:
gcc -v
The version is 4.5.0
./configure: line 955: testp.c: Permission denied
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
gcc: testp.c: No such file or directory
gcc: no input files
./configure: line 967: ./testp: No such file or directory
Error: Unable to compile a C program using gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
Please check your compiler settings or configure flags.
gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin10/4.5.0/lto-wrapper
Target: x86_64-apple-darwin10
Configured with: ../gcc-4.5-20100107/configure --enable-languages=fortran --host=x86_64-apple-darwin10 --build=x86_64-apple-darwin10 : (reconfigured) ../gcc-4.5-20100107/configure --enable-languages=fortran,c++ --host=x86_64-apple-darwin10 --build=x86_64-apple-darwin10
Thread model: posix
gcc version 4.5.0 20100107 (experimental) (GCC)
On May 17, 2010, at 2:33 PM, Jason Swails wrote:
> I think it's time to remove the whole source directory and restart :). The
> clean target may not be thorough enough, or a bunch of other issues may be
> cropping up. Remove the directory and untar a new copy of it. Also make
> sure that gcc -v and gfortran -v are returning what you expect.
>
> Good luck!
> Jason
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon May 17 2010 - 13:00:05 PDT
