In leap (tleap, sleap, xleap), you should be able to use the command:
addIons enzyme MG2 10
This would add 10 Mg2+ ions around a structure with name enzyme.
-Bill
On Thu, May 27, 2010 at 1:21 PM, Sangita Kachhap <sangita.imtech.res.in>wrote:
>
> Hello all
>
> I am simulating restriction enzyme using amber10,i want to simulate it in
> presence of Mg2+.
> So can anybody sujjest me to how add Mg2+.
>
>
> With regard
>
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Bill Miller III
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-6715
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 27 2010 - 11:00:06 PDT
