Re: [AMBER] amber10 installtion error in parallel

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 31 May 2010 20:43:52 -0400

On Mon, May 31, 2010 at 1:35 PM, Sangita Kachhap <sangita.imtech.res.in>wrote:

> Hello all
> I am installing amber10.I have compiled it in serial using ifort.But when I
> am
> compiling it in parallel with openmpi and ifort it is giving the fowolling
> error:
>
> [sangita.master1 src]$ make parallel
> Starting installation of Amber10 (parallel) at Mon May 31 22:55:09 IST
> 2010.
> cd sander; make parallel
> make[1]: Entering directory `/home/sangita/amber10/src/sander'
> ./checkparconf
> cpp -traditional -I/opt/cluster/mpi/openmpi-1.3.3_intel/include -P
> -DBINTRAJ
> -DMPI constants.f > _constants.f
> /opt/cluster/mpi/openmpi-1.3.3_intel/bin/mpif90 -c -w95 -vec_report0 -mp1
> -ip
> -O3 -axWP -FR -o constants.o _constants.f
> /opt/cluster/mpi/openmpi-1.3.3_intel/bin/mpif90: error while loading shared
> libraries: libsvml.so: cannot open shared object file: No such file or
> directory
>

Find where libsvml.so is located and add that directory to your
LD_LIBRARY_PATH.

At least that's what I would do... no guarantee that will work for you. You
may be able to find it using

locate libsvml

Good luck!
Jason


> make[1]: *** [constants.o] Error 127
> make[1]: Leaving directory `/home/sangita/amber10/src/sander'
> make: *** [parallel] Error 2
>
> can anybody suggest me how to resolve this problem.
>
> With regard
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Mon May 31 2010 - 18:00:07 PDT
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