Have you extracted both ambertools and amber in one single directory?
First only extract ambertools and then installed it. After that rename that
directory as amber10 and extract files of amber in same directory. Then
install amber.
I think it will work.
With regard
Jignesh
NIPER
MOHALI
E-mail: - jbp087.gmail.com
On Mon, May 31, 2010 at 10:35 AM, Sangita Kachhap <sangita.imtech.res.in>wrote:
> Hello all
> I am installing amber10.I have compiled it in serial using ifort.But when I
> am
> compiling it in parallel with openmpi and ifort it is giving the fowolling
> error:
>
> [sangita.master1 src]$ make parallel
> Starting installation of Amber10 (parallel) at Mon May 31 22:55:09 IST
> 2010.
> cd sander; make parallel
> make[1]: Entering directory `/home/sangita/amber10/src/sander'
> ./checkparconf
> cpp -traditional -I/opt/cluster/mpi/openmpi-1.3.3_intel/include -P
> -DBINTRAJ
> -DMPI constants.f > _constants.f
> /opt/cluster/mpi/openmpi-1.3.3_intel/bin/mpif90 -c -w95 -vec_report0 -mp1
> -ip
> -O3 -axWP -FR -o constants.o _constants.f
> /opt/cluster/mpi/openmpi-1.3.3_intel/bin/mpif90: error while loading shared
> libraries: libsvml.so: cannot open shared object file: No such file or
> directory
> make[1]: *** [constants.o] Error 127
> make[1]: Leaving directory `/home/sangita/amber10/src/sander'
> make: *** [parallel] Error 2
>
> can anybody suggest me how to resolve this problem.
>
> With regard
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Yours faithfully,
Jignesh Patel
M.S.(Pharm.)
Center for Pharmacoinformatics
NIPER
S.A.S. Nagar
India
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Received on Mon May 31 2010 - 21:30:04 PDT
