Re: [AMBER] installation on MacOS10.6

From: Jason Swails <jason.swails.gmail.com>
Date: Sat, 15 May 2010 17:42:50 -0400

This is weird... I didn't get this error (though I started from a fresh
build of 10.6, not an upgrade). Perhaps try fink.

All the best,
Jason

On Sat, May 15, 2010 at 5:19 PM, erik zuiderweg <zuiderwe.umich.edu> wrote:

> gcc44 does not install... see errors ... thank for your help...
>
>
>
>
>
>
>
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_gcc44/work/build"
> && /usr/bin/make -j2 bootstrap "
>
> are both there.
>
>
> MAybe the problem is that my install of Macports did not install a
> .profile as promised in the download page of Macports....
>
>
> This is getting to be over my head.
>
>
>
>
>
>
>
>
> On May 15, 2010, at 11:54 AM, Paul S. Nerenberg wrote:
>
> > Hi Erik,
> >
> > I think the standard recommendation here would actually be gcc44 since it
> is more mature, but I have compiled using gcc45 on my machine (admittedly
> running MacOS 10.5, *not* 10.6) and it seems to work fine. Definitely
> install the gcc_select package, so that you can easily switch been linking
> to the "real" GNU or the Apple-provided compilers when the need arises.
> Finally (and I think someone already suggested this), I strongly recommend
> that you check out the "AMBER on Mac" website run by Mengjuei and others:
> http://amberonmac.blogspot.com/. The installation guides on that site
> have been pretty much foolproof in my experience.
> >
> > Best,
> >
> > Paul
> >
> >
> > On May 15, 2010, at 8:11 AM, erik zuiderweg wrote:
> >
> >> Which fortran package should I get from Macports for my macbook pro?
> >>
> >> qd 2.3.9 (C++/Fortran-90 double-double and quad-double looks attractive
> to me
> >>
> >> or gcc45 ?
> >>
> >>
> >>
> >> On May 14, 2010, at 9:00 PM, case wrote:
> >>
> >>> On Fri, May 14, 2010, Jason Swails wrote:
> >>>>
> >>>>> Indeed, you can mixed gfortran with apple gcc if you do instead of
> >>>>> gcc -o testp testp.c.o testp.f.o -lgfortran -framework Accelerate
> >>>>> use
> >>>>> gfortran -o testp testp.c.o testp.f.o -framework Accelerate
> >>>
> >>> Yes, but this won't get you very far with AmberTools, which always uses
> >>> the former usage, not the latter. Basically, unless you want to really
> spend
> >>> a lot of time re-writing AmberTools, you need to install compilers that
> >>> work for the first of the options above. Following advice of others,
> I've
> >>> had good luck with macports for both 10.5 and 10.6, but I had
> relatively
> >>> new machines, and am certainly no expert on all the possible
> combinations
> >>> of compilers that people might want or need to use. But it seems
> worthwhile
> >>> to try to get gcc and gfortran at the same version level.
> >>>
> >>> ....dac
> >>>
> >>>
> >>> _______________________________________________
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> >>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>
> >>>
> >>
> >>
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> >
> >
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> >
> >
>
>
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>


-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Sat May 15 2010 - 15:00:03 PDT
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