Dear all,
I tried to install AMBER 10 in centos.I had installed Amber Tools1.2 at
first and followed the amber10 user's manual.
To test parallel programs I have given the following commands
cd $AMBERHOME/test
set DO_PARALLEL 'mpirun -np 4'
export DO_PARALLEL
make test.parallel.MM < /dev/null
Then it showed the following massages
export TESTsander=/exe/sander.MPI; make test.sander.BASIC
make[1]: Entering directory `/storage/home/nsp/AMBER/amber10/test'
cd cytosine && ./Run.cytosine
/exe/sander.MPI: Command not found.
./Run.cytosine: Program error
make[1]: *** [test.sander.BASIC] Error 1
make[1]: Leaving directory `/storage/home/nsp/AMBER/amber10/test'
make: *** [test.sander.BASIC.MPI] Error 2
In the first step I set up the environment variables in the .bashrc as
follows
AMBERHOME=/storage/home/nsp/AMBER/amber10
export PATH=$PATH:/storage/home/nsp/AMBER/amber10/bin
export PATH=$PATH:$AMBERHOME/exe
How can I resolve this problem.
With Regards
Jaya
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Received on Sat May 01 2010 - 07:30:03 PDT
