My colleague Mihaly Mezei has written a very nice package SIMULAID that can do a lot (sort of a Swiss Army Knife) and among other very pretty 2D rmsd. Please contact him to obtain a free copy:
Mihaly.Mezei.mssm.edu
http://atlas.physbio.mssm.edu/~mezei/simulaid/
Good luck.
Rami
On May 20, 2010, at 11:18 AM, Rebeca García Fandiño wrote:
>
> Hi,
> Thanks for your answer. I am using Linux. I have tried your suggestions, but the problem is that the .ps file from 2drms is already in black & white.
> How could I get a .ps file from 2drms in color?
> Thanks a lot for your help.
> Best wishes,
> Rebeca.
>
>> Date: Thu, 13 May 2010 10:16:14 -0400
>> Subject: Re: [AMBER] color images from 2drms
>> From: jason.swails.gmail.com
>> To: amber.ambermd.org
>>
>> 2010/5/13 Rebeca García Fandiño <regafan.hotmail.com>
>>
>>>
>>> Hi,
>>> I am trying to use the 2drms option in ptraj "2drms out 2drms_out ps", but
>>> when I transform the 2drms_out.ps
>>
>>
>> Is 2drms_out.ps in color? What OS are you using? If the PS is in color and
>> you're using Ubuntu (or some other linux, though my suggestion will be
>> Ubuntu-specific), you may try the following:
>>
>> Install cups-pdf and evince (evince should be installed on your machine by
>> default).
>>
>> sudo apt-get install cups-pdf
>>
>> Open the postscript up in evince and print it out using the PDF printer.
>> This will put the file in a PDF directory located in your home directory
>> (~/PDF). There may be far better ways of doing this, but I'd imagine this
>> would work for me (i've done similar things in the past)
>>
>> Good luck!
>> Jason
>>
>>
>>> to pdf with ps2pdf I get only black and white images. Does anybody know how
>>> can I get color images?
>>> Thank you very much in advance,
>>>
>>> Rebeca Garcia.
>>>
>>>
>>>
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>>
>>
>>
>> --
>> Jason M. Swails
>> Quantum Theory Project,
>> University of Florida
>> Ph.D. Graduate Student
>> 352-392-4032
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>
> _________________________________________________________________
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Roman Osman
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Received on Thu May 20 2010 - 09:30:04 PDT
