On Tue, May 11, 2010, Omair A. Khan wrote:
>
> I ran gdb on teLeap, tried loading the all_nucleic94 library and received
> the following output. I have no idea how to decode it...
>
> > loadOff /opt/amber10/dat/leap/lib/all_nucleic94.lib
> Loading library: /opt/amber10/dat/leap/lib/all_nucleic94.lib
>
> Program received signal SIGSEGV, Segmentation fault.
> 0x000000000041ba9b in bAtomCoordinationSaturated ()
> Missing separate debuginfos, use: debuginfo-install glibc-2.11.1-4.x86_64
> (gdb) where
> #0 0x000000000041ba9b in bAtomCoordinationSaturated ()
> #1 0x000000000041bbe8 in bBondAtomProblem ()
> #2 0x000000000041c564 in AtomBondToFlags ()
> #3 0x000000000043e4f1 in zUnitIOBuildFromTables ()
> #4 0x0000000000431d70 in uUnitLoad ()
> #5 0x000000000045a918 in oLibraryLoad ()
> #6 0x0000000000474677 in oCmd_loadOff ()
> #7 0x000000000046d013 in yyparse ()
> #8 0x000000000046ec8a in ParseBlock ()
> #9 0x00000000004843ef in main ()
This is moderately useful, but if you don't know how to proceed, we need to
figure out how to reproduce the problem, so that someone with the proper
experience can follow up.
Can you (re-)post exactly what OS and compilers you are using? Please
include the arguments you gave to the configure script, and any other details
you can about your system.
Also, have you tried either AmberTools 1.3 or 1.4? It would be good to know
if this is something unique to an older release.
...thx...dac
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Received on Tue May 11 2010 - 15:00:06 PDT
