Thanks Bill,
I ran gdb on teLeap, tried loading the all_nucleic94 library and received
the following output. I have no idea how to decode it...
> loadOff /opt/amber10/dat/leap/lib/all_nucleic94.lib
Loading library: /opt/amber10/dat/leap/lib/all_nucleic94.lib
Program received signal SIGSEGV, Segmentation fault.
0x000000000041ba9b in bAtomCoordinationSaturated ()
Missing separate debuginfos, use: debuginfo-install glibc-2.11.1-4.x86_64
(gdb) where
#0 0x000000000041ba9b in bAtomCoordinationSaturated ()
#1 0x000000000041bbe8 in bBondAtomProblem ()
#2 0x000000000041c564 in AtomBondToFlags ()
#3 0x000000000043e4f1 in zUnitIOBuildFromTables ()
#4 0x0000000000431d70 in uUnitLoad ()
#5 0x000000000045a918 in oLibraryLoad ()
#6 0x0000000000474677 in oCmd_loadOff ()
#7 0x000000000046d013 in yyparse ()
#8 0x000000000046ec8a in ParseBlock ()
#9 0x00000000004843ef in main ()
Omair
On 11 May 2010 16:03, Bill Ross <ross.cgl.ucsf.edu> wrote:
> > That doesn't seem to work. The output is:
> >
> > "/opt/amber10/bin/tleap": not in executable format: File format not
> > recognized
> > /opt/amber10/bin/core: No such file or directory.
> >
> > I verified that tleap is executable by all users. Am I typing it in
> wrong?
>
> If you look at 'tleap' you will notice it's a script:
>
> % file tleap
> tleap: C shell script text executable
>
> So you need to e.g. 'cat tleap' to see what binary it runs,
> then use gdb on that. It used to be teLeap if I remember right.
>
> Bill
>
> > On 11 May 2010 13:39, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
> > > > *tleap: line 17: 26980 Segmentation fault (core dumped)
> > >
> > > Whenever you see 'core dumped' you can try debug by finding the
> > > tleap binary and 'gdb <binary> core' followed by 'where' to the
> > > gdb prompt, which will show the place where the error occurred.
> > >
> > > Bill
> > >
> > > _______________________________________________
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Received on Tue May 11 2010 - 14:30:03 PDT
