But most of the following frames are also like this corrupted frame. As you say , I cann't analyze the frames , I will lose much information which i don't want to see. Besides, for the minority of right frames following , What I can do ?
ÔÚ2010-05-07 12:46:46£¬"Daniel Roe" <daniel.r.roe.gmail.com> дµÀ£º
>It is possible your trajectory is corrupted at that frame. If this is the
>case then you can get ptraj to finish without crashing by ending the
>trajectory read before the corrupted frame, i.e.
>
>trajin TRAJECTORY.crd 1 X
>
>where X is the last good frame (the frame before the vlimit one).
>
>-Dan
>
>On Thu, May 6, 2010 at 8:57 PM, Yunfen Wang <wangfen041237.163.com> wrote:
>
>> Hi all,
>> Thank you for ever help.
>> But now I have met another problem. During running ptraj, it crashed , with
>> reminding that:
>> Warning in readAmberTrajectory : fsetpos failed on when
>> looking for box coordinates.
>> And I checked the output file. I found "vilimit exceeded for step ******,
>> vmax = 22.3114 " on the crashed step .
>> Is there some ways to resolve the problem? Expecting your help.
>> Thanks a lot.
>> wang
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>
>
>--
>-------------------------
>Daniel R. Roe
>Postdoctoral Associate
>SAS - Chemistry & Chemical Biology
>610 Taylor Road
>Piscataway, NJ 08854
>_______________________________________________
>AMBER mailing list
>AMBER.ambermd.org
>http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri May 07 2010 - 00:00:03 PDT
