Dear Sir/Madam,
Did any one compared the MD trajectory or binding energy results obtained by NAMD or AMBER's sander or pnemed? I am trying to reproduce the results of NAMD reported in literature, should I use sander or pnemed? I wonder if similar aligorithems are used in NAMD and Sander/Pnemed?
Best regards and many thanks for your advices,
Catherine.
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Received on Mon May 24 2010 - 09:30:03 PDT
