Re: [AMBER] tleap problems in Fedora Core 12

From: Omair A. Khan <oak3.psu.edu>
Date: Mon, 17 May 2010 14:49:24 -0400

Do you think the problem could be resolved if I use a different compiler? If
so, which would you suggest? Or should I simply switch to using sleap? (Are
the commands the same?)

Omair

On 14 May 2010 21:17, case <case.biomaps.rutgers.edu> wrote:

> On Fri, May 14, 2010, Jason Swails wrote:
> >
> > I just got a segfault with tleap while trying to prepare a new system.
> It
> > didn't occur loading a library, strictly, but it was certainly related to
> > the library being loaded. It was a custom ligand for which I created an
> OFF
> > library file (saveoff). The library and the associated PDB file would
> each
> > load separately, but trying to load the PDB after the library gave a
> > segfault.
> >
> > As a note, the compiler I used was icc 11.1.069 .
> > The file is accessible at
> > http://crunch.qtp.ufl.edu/~swails/Files/tleap_segfault.tgz
>
> I can confirm the segfault with gcc 4.4.0 on OSX 10.5.8. So it doesn't
> appear
> to be compiler-specific. But I'm travelling for the next week, and may not
> have much time to investigate....
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon May 17 2010 - 12:00:07 PDT
Custom Search