Amber11 does offer several improvements over Amber10, but AmberTools 1.4 can
be made to work alongside Amber10. AmberTools 1.2 must be installed
alongside amber10 in the amber10 directory, but it's encouraged to extract
AmberTools 1.4 into the amber11 directory, build that, and put
/path/to/amber11/bin in your PATH before /path/to/amber10/bin so that
AmberTools 1.4 programs are executed instead of AmberTools 1.2 programs (and
AMBERHOME should point to /path/to/amber11 as only AmberTools programs make
use of AMBERHOME).
However, the error you're getting is a result of left-over object files
built with the -m32 (or equivalent) flag, so you need to "make clean" to get
rid of them.
Good luck!
Jason
On Thu, May 20, 2010 at 10:03 PM, case <case.biomaps.rutgers.edu> wrote:
> On Fri, May 21, 2010, Kensuke Nakamura wrote:
> > >
> > > These are architecture issues arising from the new 64-bit support in
> snow
> > > leopard. Look at the config.h and config_amber.h and remove all
> instances
> > > of "-m32" or "-march=i686" or i386, or anything else that looks like it
> > > could be implying a 32-bit architecture (since uname -m returns i386
> for Mac
> > > OS X 10.6 unless you boot into the 64-bit kernel).
> >
> > I took -m32 out from config.h and make proceeded, before I get another
> error..
> > ld: warning: in ../netcdf/lib/libnetcdf.a, file was built for unsupported
> file format which is not the architecture being linked (x86_64)
>
> It looks like you have left-over files from an earlier compile in the
> netcdf
> subdirectory. Be sure to type "make clean" (and make sure that
> netcdf/lib/libnetcdf.a is removed) before continuing.
>
> ...good luck...dac
>
>
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Thu May 20 2010 - 20:00:03 PDT
