Hello all
I am compiling amber10, in parallel compilation I have used MPICH2 & ifort it
was compiled successfully but when run test I got following error:
[sangita.master1 test]$ make test.parallel.MM
export TESTsander=/home/sangita/amber10/exe/sander.MPI; make test.sander.BASIC
make[1]: Entering directory `/home/sangita/amber10/test'
cd cytosine && ./Run.cytosine
-----------------------------------------------------------------------------
It seems that [at least] one of the processes that was started with
mpirun did not invoke MPI_INIT before quitting (it is possible that
more than one process did not invoke MPI_INIT -- mpirun was only
notified of the first one, which was on node n0).
mpirun can *only* be used with MPI programs (i.e., programs that
invoke MPI_INIT and MPI_FINALIZE). You can use the "lamexec" program
to run non-MPI programs over the lambooted nodes.
-----------------------------------------------------------------------------
forrtl: error (78): process killed (SIGTERM)
forrtl: error (78): process killed (SIGTERM)
forrtl: error (78): process killed (SIGTERM)
./Run.cytosine: Program error
make[1]: *** [test.sander.BASIC] Error 1
make[1]: Leaving directory `/home/sangita/amber10/test'
make: *** [test.sander.BASIC.MPI] Error 2
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
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Received on Sat May 29 2010 - 04:30:03 PDT
