Re: [AMBER] AMBER

From: Asfa Ali <asfa.iisc.gmail.com>
Date: Tue, 25 May 2010 12:01:08 +0530

Hi,

Actually the crystal structure of the pdb originally had three K+ ions. I
have removed the K+ ion at residue 23 and saved the pdb file for my use, as
a result my initial pdb file(1kf1_w.pdb) has K+ ions at residue no.24 and
25.

Now after the final production run, I want to see whether the initial K+
ions are intact or they have migrated to some other place. So I want to
distinguish the two initial K+ ions from the solution K+ ions provided by
AMBER.

So will the initial K+ ions still be numbered 24 & 25 after the final prod
run?

The two pdb files are attached earlier.

Thanks,
Asfa.
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Received on Tue May 25 2010 - 00:00:04 PDT
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