Erik,
Where is your gfortran executable located? If you installed it yourself and
put it in the default directory, it's located in /usr/local/gfortran/bin.
This directory is not in the standard library search paths so you have to
add it manually by setting the environment variable "export
XTRA_FLIBS=-L/usr/local/gfortran/bin" before you run the configure script.
This is what I had to do this morning when I installed AmberTools 1.4. Hope
this helps.
Sid
PS. The output from configure will still show an error saying that it can't
compile mixed C/fortran code. But this is not the case, it will work. Just
verify in the config.h file that the variable FLIBS includes a flag for the
search directory you just added through XTRA_FLIBS.
On Fri, May 14, 2010 at 6:00 PM, case <case.biomaps.rutgers.edu> wrote:
> On Fri, May 14, 2010, Jason Swails wrote:
> >
> > > Indeed, you can mixed gfortran with apple gcc if you do instead of
> > > gcc -o testp testp.c.o testp.f.o -lgfortran -framework Accelerate
> > > use
> > > gfortran -o testp testp.c.o testp.f.o -framework Accelerate
>
> Yes, but this won't get you very far with AmberTools, which always uses
> the former usage, not the latter. Basically, unless you want to really
> spend
> a lot of time re-writing AmberTools, you need to install compilers that
> work for the first of the options above. Following advice of others, I've
> had good luck with macports for both 10.5 and 10.6, but I had relatively
> new machines, and am certainly no expert on all the possible combinations
> of compilers that people might want or need to use. But it seems
> worthwhile
> to try to get gcc and gfortran at the same version level.
>
> ....dac
>
>
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Received on Fri May 14 2010 - 23:30:03 PDT
