Re: [AMBER] Solvate box

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Wed, 26 May 2010 09:46:22 -0700

> I have built a bilayer system (a DMPC membrane), and now I want to
> solvate it with water. I want to put a layer of water molecules
> just on top and below the membrane (no water molecules within
> the membrane). How am I suppose to do it?

You could solvate on all sides, then manually delete the unwanted
waters in xleap.

I think the best approach is to program leap to do it, but this
would probably take longer up front (but more interesting).

Bill

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Received on Wed May 26 2010 - 10:00:05 PDT
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