Re: [AMBER] AmberTools-1.4 Test Problem

From: case <case.biomaps.rutgers.edu>
Date: Mon, 31 May 2010 10:57:34 -0400

On Mon, May 31, 2010, Hopkins, Robert wrote:
>
> I'm using a Cygwin environment on a Windows machine and have
> (apparently) configured and installed AmberTools-1.4 in serial,
> successfully. However, when I tried to run the serial tests, I got the
> messages below:
>
> /usr/bin/tee: line 1: usage:: command not found

Do you have a "mkdir" on your system (type "which mkdir")? Does it accept the
"-p" flag? You could try this: manually create a "logs/test_at_serial"
directory (underneath $AMBERHOME/AmberTools/test), then comment out line
20 of test_at_serial.sh (which calls the mkdir command). See if that helps.

Alternatively, try running line 21 by hand, e.g. by typing:
   make -k -f Makefile test.serial

...dac


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Received on Mon May 31 2010 - 08:00:05 PDT
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