Dear Amber developers!
I've try to set up AmberTools 1.4 at Fedora 12 and I've got some
'suspicious' errors
like this
> Running test to compute GB Newton-Raphson and normal modes:
>
> ./Run.asp: line 8: 2409 Segmentation fault (core dumped) (
> $DO_PARALLEL ./asp > asp.out.tmp )
> ./Run.asp: Program error
> make[2]: *** [asp_test] Error 1
> Running test to compute non-GB Newton-Raphson and normal modes:
>
> ./Run.aspnb: line 8: 2425 Segmentation fault (core dumped)
> $DO_PARALLEL ./aspnb > aspnb.out.tmp
> ./Run.aspnb: Program error
> make[2]: *** [aspnb_test] Error 1
>
and so on (they all are in log file). There were too many segfaults (74
tests experienced errors).
Install script was
> export AMBERHOME="/opt/amber11"
> cd $AMBERHOME
> patch -p0 -N <bugfix_at14.all
> cd $AMBERHOME/AmberTools/src
> ./configure gnu
> make
> cd ../test
> make test
>
Install log is in attachment. Here is my system's description:*
*
>
> *uname -a*
> Linux *-1 2.6.31.5-127.fc12.x86_64 #1 SMP Sat Nov 7 21:11:14 EST 2009
> x86_64 x86_64 x86_64 GNU/Linux
> *csh --help*
> tcsh 6.17.00 (Astron) 2009-07-10
> *gcc -v*
> Thread model: posix
> gcc version 4.4.3 20100127 (Red Hat 4.4.3-4) (GCC)
>
ATs1.2 work fine.
Could you help me?
--
Sincerely,
Dmitry Mukha
Institute of Bioorganic Chemistry NAS, Minsk, Belarus
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Received on Tue May 18 2010 - 08:30:04 PDT
