patching file dat/leap/parm/gaff.dat Your AMBERHOME environment variable should be set to /opt/amber11 Using GotoBLAS2 routines in /opt/GotoBLAS2/libgoto2.a Obtaining the gnu suite version: gcc -v The version is 4.4.3 Testing the gcc compiler: gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c OK Validating the C++ compiler version: g++ -v The version is 4.4.3 OK Testing the gfortran compiler: gfortran -O0 -o testp testp.f OK Testing mixed C/Fortran compilation: gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c gfortran -O0 -c -o testp.f.o testp.f gcc -o testp testp.c.o testp.f.o -lgfortran OK Testing pointer size: gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size test_pointer_size.c Detected 64 bit operating system. Testing flex: OK Configuring NetCDF; (may be time-consuming) NetCDF configure succeeded. Configuring fftw-2.1.5; (may be time-consuming) fftw-2.1.5 configure succeeded. The configuration file, config.h, was successfully created. The next step is to type 'make install' cd netcdf/src && make install make[1]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src' Making install in f90 make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/f90' /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O3 -mtune=generic -c -o typeSizes.lo typeSizes.f90 gfortran -I../libsrc -I. -O3 -mtune=generic -c typeSizes.f90 -o typeSizes.o /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O3 -mtune=generic -c -o netcdf.lo netcdf.f90 gfortran -I../libsrc -I. -O3 -mtune=generic -c netcdf.f90 -o netcdf.o /bin/sh ../libtool --mode=link gfortran -I../libsrc -I. -O3 -mtune=generic -o libnetcdff90.la typeSizes.lo netcdf.lo mkdir .libs ar cru .libs/libnetcdff90.a typeSizes.o netcdf.o ranlib .libs/libnetcdff90.a creating libnetcdff90.la (cd .libs && rm -f libnetcdff90.la && ln -s ../libnetcdff90.la libnetcdff90.la) make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/f90' make[3]: Nothing to be done for `install-exec-am'. test -z "/opt/amber11/AmberTools/src/netcdf/share/man/man3" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/opt/amber11/AmberTools/src/netcdf/share/man/man3/netcdf_f90.3' test -z "/opt/amber11/AmberTools/src/netcdf/include" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'typesizes.mod' '/opt/amber11/AmberTools/src/netcdf/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/opt/amber11/AmberTools/src/netcdf/include/netcdf.mod' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/f90' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/f90' Making install in fortran make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/fortran' depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-attio.lo fort-attio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o fort-attio.o depbase=`echo fort-control.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-control.lo fort-control.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-control.lo -MD -MP -MF .deps/fort-control.Tpo -c fort-control.c -o fort-control.o depbase=`echo fort-dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-dim.lo fort-dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-dim.lo -MD -MP -MF .deps/fort-dim.Tpo -c fort-dim.c -o fort-dim.o depbase=`echo fort-genatt.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genatt.lo fort-genatt.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genatt.lo -MD -MP -MF .deps/fort-genatt.Tpo -c fort-genatt.c -o fort-genatt.o depbase=`echo fort-geninq.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-geninq.lo fort-geninq.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-geninq.lo -MD -MP -MF .deps/fort-geninq.Tpo -c fort-geninq.c -o fort-geninq.o depbase=`echo fort-genvar.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-genvar.lo fort-genvar.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-genvar.lo -MD -MP -MF .deps/fort-genvar.Tpo -c fort-genvar.c -o fort-genvar.o depbase=`echo fort-lib.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-lib.lo fort-lib.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-lib.lo -MD -MP -MF .deps/fort-lib.Tpo -c fort-lib.c -o fort-lib.o depbase=`echo fort-misc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-misc.lo fort-misc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-misc.lo -MD -MP -MF .deps/fort-misc.Tpo -c fort-misc.c -o fort-misc.o depbase=`echo fort-v2compat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-v2compat.lo fort-v2compat.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-v2compat.lo -MD -MP -MF .deps/fort-v2compat.Tpo -c fort-v2compat.c -o fort-v2compat.o depbase=`echo fort-vario.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-vario.lo fort-vario.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-vario.lo -MD -MP -MF .deps/fort-vario.Tpo -c fort-vario.c -o fort-vario.o depbase=`echo fort-var1io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-var1io.lo fort-var1io.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-var1io.lo -MD -MP -MF .deps/fort-var1io.Tpo -c fort-var1io.c -o fort-var1io.o depbase=`echo fort-varaio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varaio.lo fort-varaio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varaio.lo -MD -MP -MF .deps/fort-varaio.Tpo -c fort-varaio.c -o fort-varaio.o depbase=`echo fort-varmio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varmio.lo fort-varmio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varmio.lo -MD -MP -MF .deps/fort-varmio.Tpo -c fort-varmio.c -o fort-varmio.o depbase=`echo fort-varsio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF "$depbase.Tpo" -c -o fort-varsio.lo fort-varsio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT fort-varsio.lo -MD -MP -MF .deps/fort-varsio.Tpo -c fort-varsio.c -o fort-varsio.o /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdff.la fort-attio.lo fort-control.lo fort-dim.lo fort-genatt.lo fort-geninq.lo fort-genvar.lo fort-lib.lo fort-misc.lo fort-v2compat.lo fort-vario.lo fort-var1io.lo fort-varaio.lo fort-varmio.lo fort-varsio.lo ../f90/libnetcdff90.la mkdir .libs rm -fr .libs/libnetcdff.lax mkdir .libs/libnetcdff.lax rm -fr .libs/libnetcdff.lax/libnetcdff90.a mkdir .libs/libnetcdff.lax/libnetcdff90.a (cd .libs/libnetcdff.lax/libnetcdff90.a && ar x /opt/amber11/AmberTools/src/netcdf/src/fortran/../f90/.libs/libnetcdff90.a) ar cru .libs/libnetcdff.a fort-attio.o fort-control.o fort-dim.o fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o fort-varsio.o .libs/libnetcdff.lax/libnetcdff90.a/typeSizes.o .libs/libnetcdff.lax/libnetcdff90.a/netcdf.o ranlib .libs/libnetcdff.a rm -fr .libs/libnetcdff.lax creating libnetcdff.la (cd .libs && rm -f libnetcdff.la && ln -s ../libnetcdff.la libnetcdff.la) make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/fortran' test -z "/opt/amber11/AmberTools/src/netcdf/lib" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/lib" test -z "/opt/amber11/AmberTools/src/netcdf/include" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'netcdf.inc' '/opt/amber11/AmberTools/src/netcdf/include/netcdf.inc' test -z "/opt/amber11/AmberTools/src/netcdf/share/man/man3" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/opt/amber11/AmberTools/src/netcdf/share/man/man3/netcdf_f77.3' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/fortran' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/fortran' Making install in libsrc make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/libsrc' depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF "$depbase.Tpo" -c -o attr.lo attr.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF "$depbase.Tpo" -c -o ncx.lo ncx.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF "$depbase.Tpo" -c -o putget.lo putget.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF "$depbase.Tpo" -c -o dim.lo dim.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF "$depbase.Tpo" -c -o error.lo error.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF "$depbase.Tpo" -c -o libvers.lo libvers.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF "$depbase.Tpo" -c -o nc.lo nc.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF "$depbase.Tpo" -c -o string.lo string.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF "$depbase.Tpo" -c -o v1hpg.lo v1hpg.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF "$depbase.Tpo" -c -o var.lo var.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF "$depbase.Tpo" -c -o posixio.lo posixio.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \ if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF "$depbase.Tpo" -c -o v2i.lo v2i.c; \ then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit 1; fi gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdf2.la v2i.lo mkdir .libs ar cru .libs/libnetcdf2.a v2i.o ranlib .libs/libnetcdf2.a creating libnetcdf2.la (cd .libs && rm -f libnetcdf2.la && ln -s ../libnetcdf2.la libnetcdf2.la) /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o libnetcdf.la -rpath /opt/amber11/AmberTools/src/netcdf/lib -version-info 4:0:0 -no-undefined attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo posixio.lo libnetcdf2.la ../fortran/libnetcdff.la rm -fr .libs/libnetcdf.lax mkdir .libs/libnetcdf.lax rm -fr .libs/libnetcdf.lax/libnetcdf2.a mkdir .libs/libnetcdf.lax/libnetcdf2.a (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x /opt/amber11/AmberTools/src/netcdf/src/libsrc/./.libs/libnetcdf2.a) rm -fr .libs/libnetcdf.lax/libnetcdff.a mkdir .libs/libnetcdf.lax/libnetcdff.a (cd .libs/libnetcdf.lax/libnetcdff.a && ar x /opt/amber11/AmberTools/src/netcdf/src/libsrc/../fortran/.libs/libnetcdff.a) ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o posixio.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o .libs/libnetcdf.lax/libnetcdff.a/fort-vario.o .libs/libnetcdf.lax/libnetcdff.a/typeSizes.o .libs/libnetcdf.lax/libnetcdff.a/netcdf.o .libs/libnetcdf.lax/libnetcdff.a/fort-var1io.o .libs/libnetcdf.lax/libnetcdff.a/fort-misc.o .libs/libnetcdf.lax/libnetcdff.a/fort-lib.o .libs/libnetcdf.lax/libnetcdff.a/fort-varsio.o .libs/libnetcdf.lax/libnetcdff.a/fort-v2compat.o .libs/libnetcdf.lax/libnetcdff.a/fort-varmio.o .libs/libnetcdf.lax/libnetcdff.a/fort-dim.o .libs/libnetcdf.lax/libnetcdff.a/fort-genvar.o .libs/libnetcdf.lax/libnetcdff.a/fort-genatt.o .libs/libnetcdf.lax/libnetcdff.a/fort-varaio.o .libs/libnetcdf.lax/libnetcdff.a/fort-attio.o .libs/libnetcdf.lax/libnetcdff.a/fort-control.o .libs/libnetcdf.lax/libnetcdff.a/fort-geninq.o ranlib .libs/libnetcdf.a rm -fr .libs/libnetcdf.lax creating libnetcdf.la (cd .libs && rm -f libnetcdf.la && ln -s ../libnetcdf.la libnetcdf.la) make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/libsrc' test -z "/opt/amber11/AmberTools/src/netcdf/lib" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/opt/amber11/AmberTools/src/netcdf/lib/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /opt/amber11/AmberTools/src/netcdf/lib/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /opt/amber11/AmberTools/src/netcdf/lib/libnetcdf.a chmod 644 /opt/amber11/AmberTools/src/netcdf/lib/libnetcdf.a ranlib /opt/amber11/AmberTools/src/netcdf/lib/libnetcdf.a PATH="$PATH:/sbin" ldconfig -n /opt/amber11/AmberTools/src/netcdf/lib ---------------------------------------------------------------------- Libraries have been installed in: /opt/amber11/AmberTools/src/netcdf/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/opt/amber11/AmberTools/src/netcdf/include" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/include" /usr/bin/install -c -m 644 'netcdf.h' '/opt/amber11/AmberTools/src/netcdf/include/netcdf.h' test -z "/opt/amber11/AmberTools/src/netcdf/share/man/man3" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/opt/amber11/AmberTools/src/netcdf/share/man/man3/netcdf.3' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/libsrc' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/libsrc' Making install in nctest make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nctest' make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nctest' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nctest' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nctest' Making install in ncgen make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/ncgen' depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT main.o -MD -MP -MF "$depbase.Tpo" -c -o main.o main.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT load.o -MD -MP -MF "$depbase.Tpo" -c -o load.o load.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncgentab.o -MD -MP -MF "$depbase.Tpo" -c -o ncgentab.o ncgentab.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT escapes.o -MD -MP -MF "$depbase.Tpo" -c -o escapes.o escapes.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT getfill.o -MD -MP -MF "$depbase.Tpo" -c -o getfill.o getfill.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT init.o -MD -MP -MF "$depbase.Tpo" -c -o init.o init.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I.. -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT genlib.o -MD -MP -MF "$depbase.Tpo" -c -o genlib.o genlib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.la mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/.libs/libnetcdf.a make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/ncgen' test -z "/opt/amber11/AmberTools/src/netcdf/bin" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/opt/amber11/AmberTools/src/netcdf/bin/ncgen' /usr/bin/install -c ncgen /opt/amber11/AmberTools/src/netcdf/bin/ncgen test -z "/opt/amber11/AmberTools/src/netcdf/share/man/man1" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/opt/amber11/AmberTools/src/netcdf/share/man/man1/ncgen.1' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/ncgen' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/ncgen' Making install in ncdump make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/ncdump' depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT ncdump.o -MD -MP -MF "$depbase.Tpo" -c -o ncdump.o ncdump.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT vardata.o -MD -MP -MF "$depbase.Tpo" -c -o vardata.o vardata.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \ if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -MT dumplib.o -MD -MP -MF "$depbase.Tpo" -c -o dumplib.o dumplib.c; \ then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CC --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/libnetcdf.la mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o ncdump ncdump.o vardata.o dumplib.o -lm ../libsrc/.libs/libnetcdf.a make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/ncdump' test -z "/opt/amber11/AmberTools/src/netcdf/bin" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/opt/amber11/AmberTools/src/netcdf/bin/ncdump' /usr/bin/install -c ncdump /opt/amber11/AmberTools/src/netcdf/bin/ncdump test -z "/opt/amber11/AmberTools/src/netcdf/share/man/man1" || mkdir -p -- "/opt/amber11/AmberTools/src/netcdf/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/opt/amber11/AmberTools/src/netcdf/share/man/man1/ncdump.1' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/ncdump' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/ncdump' Making install in nf_test make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nf_test' make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nf_test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nf_test' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nf_test' Making install in nc_test make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nc_test' make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/nc_test' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nc_test' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/nc_test' Making install in examples make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples' Making install in C make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/C' make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/C' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/C' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/C' Making install in CDL make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/CDL' make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/CDL' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/CDL' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/CDL' Making install in F77 make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F77' make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F77' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F77' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F77' Making install in F90 make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make install-am make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples/F90' make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples' make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src/examples' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src/examples' make[2]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src' make[3]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src' make[3]: Nothing to be done for `install-exec-am'. make install-data-hook make[4]: Entering directory `/opt/amber11/AmberTools/src/netcdf/src' +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[4]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src' make[3]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src' make[2]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src' make[1]: Leaving directory `/opt/amber11/AmberTools/src/netcdf/src' Starting installation of AmberTools, version 1.4 serial at Tue May 18 18:05:39 EEST 2010. (cd ucpp-1.3 && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/ucpp-1.3' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE mem.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE nhash.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE cpp.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE lexer.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE assert.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSTAND_ALONE eval.c gcc -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/ucpp-1.3' (cd byacc && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/byacc' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o closure.o closure.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o error.o error.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lalr.o lalr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o lr0.o lr0.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o main.o main.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mkpar.o mkpar.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o output.o output.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o reader.o reader.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o skeleton.o skeleton.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symtab.o symtab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o verbose.o verbose.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o warshall.o warshall.c main.o: In function `create_file_names': main.c:(.text+0x641): warning: the use of `mktemp' is dangerous, better use `mkstemp' mv yacc /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/byacc' (cd arpack && make install ); make[1]: Entering directory `/opt/amber11/AmberTools/src/arpack' gfortran -c -O3 -mtune=generic -o ivout.o ivout.f gfortran -c -O3 -mtune=generic -o dvout.o dvout.f gfortran -c -O3 -mtune=generic -o dgetv0.o dgetv0.f gfortran -c -O3 -mtune=generic -o dlaqrb.o dlaqrb.f gfortran -c -O3 -mtune=generic -o dnaitr.o dnaitr.f gfortran -c -O3 -mtune=generic -o dnapps.o dnapps.f gfortran -c -O3 -mtune=generic -o dnaup2.o dnaup2.f gfortran -c -O3 -mtune=generic -o dnaupd.o dnaupd.f gfortran -c -O3 -mtune=generic -o dnconv.o dnconv.f gfortran -c -O3 -mtune=generic -o dneigh.o dneigh.f gfortran -c -O3 -mtune=generic -o dmout.o dmout.f gfortran -c -O3 -mtune=generic -o dneupd.o dneupd.f gfortran -c -O3 -mtune=generic -o dngets.o dngets.f gfortran -c -O3 -mtune=generic -o dsaitr.o dsaitr.f gfortran -c -O3 -mtune=generic -o dsapps.o dsapps.f gfortran -c -O3 -mtune=generic -o dsaup2.o dsaup2.f gfortran -c -O3 -mtune=generic -o dsaupd.o dsaupd.f gfortran -c -O3 -mtune=generic -o dsconv.o dsconv.f gfortran -c -O3 -mtune=generic -o dseigt.o dseigt.f gfortran -c -O3 -mtune=generic -o dsesrt.o dsesrt.f gfortran -c -O3 -mtune=generic -o dseupd.o dseupd.f gfortran -c -O3 -mtune=generic -o dsgets.o dsgets.f gfortran -c -O3 -mtune=generic -o dsortc.o dsortc.f gfortran -c -O3 -mtune=generic -o dsortr.o dsortr.f gfortran -c -O3 -mtune=generic -o dstatn.o dstatn.f gfortran -c -O3 -mtune=generic -o dstats.o dstats.f gfortran -c -O3 -mtune=generic -o dstqrb.o dstqrb.f gfortran -c -O3 -mtune=generic -o dsarpack.o dsarpack.f dsarpack.f:424.3: 12 go to 11 1 dsarpack.f:199.15: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) dsarpack.f:545.3: 18 go to 17 1 dsarpack.f:199.18: go to (12,18) label 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /opt/amber11/lib make[1]: Leaving directory `/opt/amber11/AmberTools/src/arpack' (cd lapack && make skip ) make[1]: Entering directory `/opt/amber11/AmberTools/src/lapack' skipping compilation of LAPACK make[1]: Leaving directory `/opt/amber11/AmberTools/src/lapack' (cd blas && make skip ) make[1]: Entering directory `/opt/amber11/AmberTools/src/blas' skipping compilation of BLAS make[1]: Leaving directory `/opt/amber11/AmberTools/src/blas' (cd c9x-complex && make skip ) make[1]: Entering directory `/opt/amber11/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[1]: Leaving directory `/opt/amber11/AmberTools/src/c9x-complex' (cd etc && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/etc' cpp -traditional -P -DBINTRAJ ambpdb.f90 > _ambpdb.f90 gfortran -c -O0 -ffree-form -o ambpdb.o _ambpdb.f90 cpp -traditional -P -DBINTRAJ forFIRSTtype.f90 > _forFIRSTtype.f90 gfortran -c -O0 -ffree-form -o forFIRSTtype.o _forFIRSTtype.f90 cpp -traditional -P -DBINTRAJ forFIRSTbond.f90 > _forFIRSTbond.f90 gfortran -c -O0 -ffree-form -o forFIRSTbond.o _forFIRSTbond.f90 cpp -traditional -P -DBINTRAJ forFIRSThbond.f90 > _forFIRSThbond.f90 gfortran -c -O0 -ffree-form -o forFIRSThbond.o _forFIRSThbond.f90 cpp -traditional -P -DBINTRAJ forFIRSTteth.f90 > _forFIRSTteth.f90 gfortran -c -O0 -ffree-form -o forFIRSTteth.o _forFIRSTteth.f90 cpp -traditional -P -DBINTRAJ forFIRSToutp.f90 > _forFIRSToutp.f90 gfortran -c -O0 -ffree-form -o forFIRSToutp.o _forFIRSToutp.f90 cpp -traditional -P -DBINTRAJ forFIRSTsugar.f90 > _forFIRSTsugar.f90 gfortran -c -O0 -ffree-form -o forFIRSTsugar.o _forFIRSTsugar.f90 cd ../lib && make sys2.a make[2]: Entering directory `/opt/amber11/AmberTools/src/lib' cpp -traditional -P -DBINTRAJ sys.f > _sys.f gfortran -c -O0 -o sys.o _sys.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o wallclock.o wallclock.c cpp -traditional -P -DBINTRAJ random.f > _random.f gfortran -c -O0 -ffree-form -o random.o _random.f cpp -traditional -P -DBINTRAJ veclib.f > _veclib.f gfortran -c -O0 -ffree-form -o veclib.o _veclib.f cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f gfortran -c -O0 -o amopen.o _amopen.f cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f gfortran -c -O0 -o mexit.o _mexit.f cpp -traditional -P -DBINTRAJ nxtsec.f > _nxtsec.f gfortran -c -O0 -o nxtsec.o _nxtsec.f cpp -traditional -P -DBINTRAJ rgroup.f > _rgroup.f gfortran -c -O0 -o rgroup.o _rgroup.f cpp -traditional -P -DBINTRAJ rfree.f > _rfree.f gfortran -c -O0 -o rfree.o _rfree.f cpp -traditional -P -DBINTRAJ matinv.f > _matinv.f gfortran -c -O0 -o matinv.o _matinv.f ar rv sys2.a sys.o wallclock.o random.o veclib.o amopen.o mexit.o nxtsec.o rgroup.o rfree.o matinv.o ar: creating sys2.a a - sys.o a - wallclock.o a - random.o a - veclib.o a - amopen.o a - mexit.o a - nxtsec.o a - rgroup.o a - rfree.o a - matinv.o ranlib sys2.a make[2]: Leaving directory `/opt/amber11/AmberTools/src/lib' gfortran -o ambpdb ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize.o elsize.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize elsize.o -lm gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf.o molsurf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf molsurf.o -lm cpp -traditional -P -DBINTRAJ add_pdb.f90 > _add_pdb.f90 gfortran -c -O0 -ffree-form -o add_pdb.o _add_pdb.f90 gfortran -o add_pdb add_pdb.o ../lib/sys2.a cpp -traditional -P -DBINTRAJ lapack.f > _lapack.f gfortran -c -O0 -o lapack.o _lapack.f cpp -traditional -P -DBINTRAJ resp.f > _resp.f gfortran -c -O0 -o resp.o _resp.f gfortran lapack.o resp.o -o resp /bin/mv ambpdb elsize molsurf add_pdb resp /opt/amber11/bin /bin/cp calcpka.pl cpinutil.pl CPin.pm lmodprmtop /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/etc' (cd chamber && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/chamber' make chamber make[2]: Entering directory `/opt/amber11/AmberTools/src/chamber' cpp -traditional -P -DBINTRAJ psf_strings.f > _psf_strings.f gfortran -c -O3 -mtune=generic -ffree-form -o psf_strings.o _psf_strings.f cpp -traditional -P -DBINTRAJ cmap.f > _cmap.f gfortran -c -O3 -mtune=generic -ffree-form -o cmap.o _cmap.f cpp -traditional -P -DBINTRAJ psfprm.f > _psfprm.f gfortran -c -O3 -mtune=generic -ffree-form -o psfprm.o _psfprm.f cpp -traditional -P -DBINTRAJ molnt.f > _molnt.f gfortran -c -O3 -mtune=generic -ffree-form -o molnt.o _molnt.f cpp -traditional -P -DBINTRAJ write_prmtop.f > _write_prmtop.f gfortran -c -O3 -mtune=generic -ffree-form -o write_prmtop.o _write_prmtop.f cpp -traditional -P -DBINTRAJ main.f > _main.f gfortran -c -O3 -mtune=generic -ffree-form -o main.o _main.f cpp -traditional -P -DBINTRAJ gbradii.f > _gbradii.f gfortran -c -O3 -mtune=generic -ffree-form -o gbradii.o _gbradii.f cpp -traditional -P -DBINTRAJ sort.f > _sort.f gfortran -c -O3 -mtune=generic -ffree-form -o sort.o _sort.f cpp -traditional -P -DBINTRAJ mkexcl.f > _mkexcl.f gfortran -c -O3 -mtune=generic -ffree-form -o mkexcl.o _mkexcl.f gfortran -o chamber main.o psfprm.o psf_strings.o write_prmtop.o gbradii.o sort.o mkexcl.o cmap.o molnt.o make[2]: Leaving directory `/opt/amber11/AmberTools/src/chamber' mv chamber /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/chamber' (cd pbsa && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/pbsa' cpp -traditional -P -DBINTRAJ -DPBSA dsvdc.f > _dsvdc.f gfortran -c -O3 -mtune=generic -ffree-form -o dsvdc.o _dsvdc.f cpp -traditional -P -DBINTRAJ -DPBSA egb.f > _egb.f gfortran -c -O3 -mtune=generic -ffree-form -o egb.o _egb.f cpp -traditional -P -DBINTRAJ -DPBSA timer.f > _timer.f gfortran -c -O3 -mtune=generic -ffree-form -o timer.o _timer.f cpp -traditional -P -DBINTRAJ -DPBSA decomp.f > _decomp.f gfortran -c -O3 -mtune=generic -ffree-form -o decomp.o _decomp.f cpp -traditional -P -DBINTRAJ -DPBSA pbsa.f > _pbsa.f gfortran -c -O3 -mtune=generic -ffree-form -o pbsa.o _pbsa.f cpp -traditional -P -DBINTRAJ -DPBSA sa_driver.f > _sa_driver.f gfortran -c -O3 -mtune=generic -ffree-form -o sa_driver.o _sa_driver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_nlsolver.f > _pb_nlsolver.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_nlsolver.o _pb_nlsolver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_lsolver.f > _pb_lsolver.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_lsolver.o _pb_lsolver.f cpp -traditional -P -DBINTRAJ -DPBSA pb_force.f > _pb_force.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_force.o _pb_force.f cpp -traditional -P -DBINTRAJ -DPBSA np_force.f > _np_force.f gfortran -c -O3 -mtune=generic -ffree-form -o np_force.o _np_force.f cpp -traditional -P -DBINTRAJ -DPBSA pb_read.f > _pb_read.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_read.o _pb_read.f cpp -traditional -P -DBINTRAJ -DPBSA pb_write.f > _pb_write.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_write.o _pb_write.f cpp -traditional -P -DBINTRAJ -DPBSA getcoor.f > _getcoor.f gfortran -c -O3 -mtune=generic -ffree-form -o getcoor.o _getcoor.f cpp -traditional -P -DBINTRAJ -DPBSA runmd.f > _runmd.f gfortran -c -O3 -mtune=generic -ffree-form -o runmd.o _runmd.f cpp -traditional -P -DBINTRAJ -DPBSA runmin.f > _runmin.f gfortran -c -O3 -mtune=generic -ffree-form -o runmin.o _runmin.f cpp -traditional -P -DBINTRAJ -DPBSA force.f > _force.f gfortran -c -O3 -mtune=generic -ffree-form -o force.o _force.f cpp -traditional -P -DBINTRAJ -DPBSA pb_init.f > _pb_init.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_init.o _pb_init.f cpp -traditional -P -DBINTRAJ -DPBSA pb_exmol.f > _pb_exmol.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_exmol.o _pb_exmol.f cpp -traditional -P -DBINTRAJ -DPBSA pb_mpfrc.f > _pb_mpfrc.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_mpfrc.o _pb_mpfrc.f cpp -traditional -P -DBINTRAJ -DPBSA pb_direct.f > _pb_direct.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_direct.o _pb_direct.f cpp -traditional -P -DBINTRAJ -DPBSA pb_list.f > _pb_list.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_list.o _pb_list.f cpp -traditional -P -DBINTRAJ -DPBSA ene.f > _ene.f gfortran -c -O3 -mtune=generic -ffree-form -o ene.o _ene.f cpp -traditional -P -DBINTRAJ -DPBSA locmem.f > _locmem.f gfortran -c -O3 -mtune=generic -ffree-form -o locmem.o _locmem.f cpp -traditional -P -DBINTRAJ -DPBSA myopen.f > _myopen.f gfortran -c -O3 -mtune=generic -ffree-form -o myopen.o _myopen.f cpp -traditional -P -DBINTRAJ -DPBSA rdparm.f > _rdparm.f gfortran -c -O3 -mtune=generic -ffree-form -o rdparm.o _rdparm.f cpp -traditional -P -DBINTRAJ -DPBSA rgroup.f > _rgroup.f gfortran -c -O3 -mtune=generic -ffree-form -o rgroup.o _rgroup.f cpp -traditional -P -DBINTRAJ -DPBSA rfree.f > _rfree.f gfortran -c -O3 -mtune=generic -ffree-form -o rfree.o _rfree.f cpp -traditional -P -DBINTRAJ -DPBSA debug.f > _debug.f gfortran -c -O3 -mtune=generic -ffree-form -o debug.o _debug.f cd ../lib && make nxtsec.o make[2]: Entering directory `/opt/amber11/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/opt/amber11/AmberTools/src/lib' cd ../lapack && make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/opt/amber11/AmberTools/src/lapack' cd ../blas && make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/opt/amber11/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/opt/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/arpack' gfortran -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_nlsolver.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o ../lib/nxtsec.o /opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread /bin/mv pbsa /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/pbsa' (cd rism && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ constants.f > _constants.f gfortran -c -O3 -mtune=generic -ffree-form -o constants.o _constants.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ quaternion.f > _quaternion.f gfortran -c -O3 -mtune=generic -ffree-form -o quaternion.o _quaternion.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_util.f > _rism_util.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_util.o _rism_util.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d.f > _rism1d.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d.o _rism1d.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ output.f > _output.f gfortran -c -O0 -ffree-form -o output.o _output.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ pubfft.f > _pubfft.f gfortran -c -O0 -ffree-form -o pubfft.o _pubfft.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ erfcfun.f > _erfcfun.f gfortran -c -O3 -mtune=generic -ffree-form -o erfcfun.o _erfcfun.f gfortran -o rism1d rism1d.o output.o rism_util.o quaternion.o pubfft.o erfcfun.o constants.o ../lib/amopen.o ../lib/mexit.o ../lib/nxtsec.o ../lib/sys.o \ /opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread /bin/mv rism1d /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/rism' (cd antechamber && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/antechamber' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o am1bcc.o am1bcc.c gcc am1bcc.o -lm -o am1bcc gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o acdoctor.o acdoctor.c gcc acdoctor.o -lm -o acdoctor gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o antechamber.o antechamber.c gcc antechamber.o -lm -o antechamber gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o atomtype.o atomtype.c gcc atomtype.o -lm -o atomtype gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o bondtype.o bondtype.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ncsu-penalties.o ncsu-penalties.c gcc ncsu-penalties.o bondtype.o -lm -o bondtype gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o charmmgen.o charmmgen.c gcc charmmgen.o -lm -o charmmgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o crdgrow.o crdgrow.c gcc crdgrow.o -lm -o crdgrow gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o database.o database.c gcc database.o -lm -o database gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o espgen.o espgen.c gcc espgen.o -o espgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmcal.o parmcal.c gcc parmcal.o -lm -o parmcal gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parmchk.o parmchk.c gcc parmchk.o -lm -o parmchk gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o prepgen.o prepgen.c gcc prepgen.o -lm -o prepgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o residuegen.o residuegen.c gcc residuegen.o -lm -o residuegen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o respgen.o respgen.c gcc respgen.o -lm -o respgen gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o translate.o translate.c gcc translate.o -lm -o translate gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2ff.o top2ff.c gcc top2ff.o -lm -o top2ff gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o top2mol2.o top2mol2.c gcc top2mol2.o -lm -o top2mol2 mv -f am1bcc acdoctor antechamber atomtype bondtype charmmgen crdgrow database espgen parmcal parmchk prepgen residuegen respgen translate top2ff top2mol2 /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/antechamber' (cd sqm && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/sqm' cpp -traditional -P -DBINTRAJ constants.f > _constants.f gfortran -c -O3 -mtune=generic -ffree-form -o constants.o _constants.f cpp -traditional -P -DBINTRAJ findmask.f > _findmask.f gfortran -c -O0 -ffree-form -o findmask.o _findmask.f cpp -traditional -P -DBINTRAJ qmmm_qmtheorymodule.f > _qmmm_qmtheorymodule.f gfortran -c -O0 -ffree-form -o qmmm_qmtheorymodule.o _qmmm_qmtheorymodule.f cpp -traditional -P -DBINTRAJ qmmm_module.f > _qmmm_module.f gfortran -c -O3 -mtune=generic -ffree-form -o qmmm_module.o _qmmm_module.f cpp -traditional -P -DBINTRAJ qm2_pm6_hof_module.f > _qm2_pm6_hof_module.f gfortran -c -O0 -ffree-form -o qm2_pm6_hof_module.o _qm2_pm6_hof_module.f cpp -traditional -P -DBINTRAJ sqm.f > _sqm.f gfortran -c -O0 -ffree-form -o sqm.o _sqm.f cpp -traditional -P -DBINTRAJ xmin.f > _xmin.f gfortran -c -O0 -ffree-form -o xmin.o _xmin.f gcc -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DSQM -c -o xminC.o ../sff/xminC.c cpp -traditional -P -DBINTRAJ amopen.f > _amopen.f gfortran -c -O0 -ffree-form -o amopen.o _amopen.f cpp -traditional -P -DBINTRAJ mexit.f > _mexit.f gfortran -c -O0 -ffree-form -o mexit.o _mexit.f cpp -traditional -P -DBINTRAJ assert.f > _assert.f gfortran -c -O0 -ffree-form -o assert.o _assert.f cpp -traditional -P -DBINTRAJ timer_dummy.f > _timer_dummy.f gfortran -c -O0 -ffree-form -o timer_dummy.o _timer_dummy.f cpp -traditional -P -DBINTRAJ nmlsrc.f > _nmlsrc.f gfortran -c -O0 -ffree-form -o nmlsrc.o _nmlsrc.f cpp -traditional -P -DBINTRAJ -DSQM qm_print_info.f > _qm_print_info.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_print_info.SQM.o _qm_print_info.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_energy.f > _qm2_energy.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_energy.SQM.o _qm2_energy.SQM.f cpp -traditional -P -DBINTRAJ -DSQM qm2_read_nm_and_alloc.f > _qm2_read_nm_and_alloc.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_read_nm_and_alloc.SQM.o _qm2_read_nm_and_alloc.SQM.f cpp -traditional -P -DBINTRAJ qm2_iterator_mod.f > _qm2_iterator_mod.f gfortran -c -O0 -ffree-form -o qm2_iterator_mod.o _qm2_iterator_mod.f cpp -traditional -P -DBINTRAJ -DSQM qm2_scf.f > _qm2_scf.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_scf.SQM.o _qm2_scf.SQM.f cpp -traditional -P -DBINTRAJ qm2_dftb_module.f > _qm2_dftb_module.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_module.o _qm2_dftb_module.f cpp -traditional -P -DBINTRAJ -DSQM qm2_dftb_scf.f > _qm2_dftb_scf.SQM.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_scf.SQM.o _qm2_dftb_scf.SQM.f cpp -traditional -P -DBINTRAJ qm2_allocate_e_repul.f > _qm2_allocate_e_repul.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_allocate_e_repul.o _qm2_allocate_e_repul.f cpp -traditional -P -DBINTRAJ qm2_calc_charges.f > _qm2_calc_charges.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_calc_charges.o _qm2_calc_charges.f cpp -traditional -P -DBINTRAJ qm2_calc_rij_and_eqns.f > _qm2_calc_rij_and_eqns.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_calc_rij_and_eqns.o _qm2_calc_rij_and_eqns.f cpp -traditional -P -DBINTRAJ qm2_dihed.f > _qm2_dihed.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dihed.o _qm2_dihed.f cpp -traditional -P -DBINTRAJ qm2_fock.f > _qm2_fock.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_fock.o _qm2_fock.f cpp -traditional -P -DBINTRAJ qm2_get_qm_forces.f > _qm2_get_qm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_get_qm_forces.o _qm2_get_qm_forces.f cpp -traditional -P -DBINTRAJ qm2_get_qmmm_forces.f > _qm2_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_get_qmmm_forces.o _qm2_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_h1elec.f > _qm2_h1elec.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_h1elec.o _qm2_h1elec.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmqm.f > _qm2_hcore_qmqm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_hcore_qmqm.o _qm2_hcore_qmqm.f cpp -traditional -P -DBINTRAJ qm2_hcore_qmmm.f > _qm2_hcore_qmmm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_hcore_qmmm.o _qm2_hcore_qmmm.f cpp -traditional -P -DBINTRAJ qm2_identify_peptide_links.f > _qm2_identify_peptide_links.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_identify_peptide_links.o _qm2_identify_peptide_links.f cpp -traditional -P -DBINTRAJ qm2_load_params_and_allocate.f > _qm2_load_params_and_allocate.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_load_params_and_allocate.o _qm2_load_params_and_allocate.f cpp -traditional -P -DBINTRAJ qm2_repp.f > _qm2_repp.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_repp.o _qm2_repp.f cpp -traditional -P -DBINTRAJ qm2_rotate_qmqm.f > _qm2_rotate_qmqm.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_rotate_qmqm.o _qm2_rotate_qmqm.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion.f > _qm2_core_core_repulsion.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_core_core_repulsion.o _qm2_core_core_repulsion.f cpp -traditional -P -DBINTRAJ qm2_core_core_repulsion_dxyz.f > _qm2_core_core_repulsion_dxyz.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_core_core_repulsion_dxyz.o _qm2_core_core_repulsion_dxyz.f cpp -traditional -P -DBINTRAJ qm2_setup_orb_exp.f > _qm2_setup_orb_exp.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_setup_orb_exp.o _qm2_setup_orb_exp.f cpp -traditional -P -DBINTRAJ qm2_smallest_number.f > _qm2_smallest_number.f gfortran -c -O0 -ffree-form -o qm2_smallest_number.o _qm2_smallest_number.f cpp -traditional -P -DBINTRAJ qm2_fock_predict.f > _qm2_fock_predict.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_fock_predict.o _qm2_fock_predict.f cpp -traditional -P -DBINTRAJ qm_gb.f > _qm_gb.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_gb.o _qm_gb.f cpp -traditional -P -DBINTRAJ qm_zero_charges.f > _qm_zero_charges.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_zero_charges.o _qm_zero_charges.f cpp -traditional -P -DBINTRAJ qm_assign_atom_types.f > _qm_assign_atom_types.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_assign_atom_types.o _qm_assign_atom_types.f cpp -traditional -P -DBINTRAJ qm_link_atoms.f > _qm_link_atoms.f gfortran -c -O3 -mtune=generic -ffree-form -o qm_link_atoms.o _qm_link_atoms.f cpp -traditional -P -DBINTRAJ qm2_print_charges.f > _qm2_print_charges.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_print_charges.o _qm2_print_charges.f cpp -traditional -P -DBINTRAJ qm2_dftb_broyden.f > _qm2_dftb_broyden.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_broyden.o _qm2_dftb_broyden.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_egr.f > _qm2_dftb_dispersion_egr.f gfortran -c -O0 -ffree-form -o qm2_dftb_dispersion_egr.o _qm2_dftb_dispersion_egr.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersion_params.f > _qm2_dftb_dispersion_params.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_dispersion_params.o _qm2_dftb_dispersion_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_dispersionread.f > _qm2_dftb_dispersionread.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_dispersionread.o _qm2_dftb_dispersionread.f cpp -traditional -P -DBINTRAJ qm2_dftb_energy.f > _qm2_dftb_energy.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_energy.o _qm2_dftb_energy.f cpp -traditional -P -DBINTRAJ qm2_dftb_ewevge.f > _qm2_dftb_ewevge.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_ewevge.o _qm2_dftb_ewevge.f cpp -traditional -P -DBINTRAJ qm2_dftb_externalshift.f > _qm2_dftb_externalshift.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_externalshift.o _qm2_dftb_externalshift.f cpp -traditional -P -DBINTRAJ qm2_dftb_fermi.f > _qm2_dftb_fermi.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_fermi.o _qm2_dftb_fermi.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qm_forces.f > _qm2_dftb_get_qm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_get_qm_forces.o _qm2_dftb_get_qm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_gamma.f > _qm2_dftb_gamma.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gamma.o _qm2_dftb_gamma.f cpp -traditional -P -DBINTRAJ qm2_dftb_gammamat.f > _qm2_dftb_gammamat.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gammamat.o _qm2_dftb_gammamat.f cpp -traditional -P -DBINTRAJ qm2_dftb_get_qmmm_forces.f > _qm2_dftb_get_qmmm_forces.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_get_qmmm_forces.o _qm2_dftb_get_qmmm_forces.f cpp -traditional -P -DBINTRAJ qm2_dftb_gettab.f > _qm2_dftb_gettab.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gettab.o _qm2_dftb_gettab.f cpp -traditional -P -DBINTRAJ qm2_dftb_load_params.f > _qm2_dftb_load_params.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_load_params.o _qm2_dftb_load_params.f cpp -traditional -P -DBINTRAJ qm2_dftb_mulliken.f > _qm2_dftb_mulliken.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_mulliken.o _qm2_dftb_mulliken.f cpp -traditional -P -DBINTRAJ qm2_dftb_repulsiv.f > _qm2_dftb_repulsiv.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_repulsiv.o _qm2_dftb_repulsiv.f cpp -traditional -P -DBINTRAJ qm2_dftb_self.f > _qm2_dftb_self.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_self.o _qm2_dftb_self.f cpp -traditional -P -DBINTRAJ qm2_dftb_shift.f > _qm2_dftb_shift.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_shift.o _qm2_dftb_shift.f cpp -traditional -P -DBINTRAJ qm2_dftb_skpar.f > _qm2_dftb_skpar.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_skpar.o _qm2_dftb_skpar.f cpp -traditional -P -DBINTRAJ qm2_dftb_slkode.f > _qm2_dftb_slkode.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_slkode.o _qm2_dftb_slkode.f cpp -traditional -P -DBINTRAJ qm2_dftb_slktrafo.f > _qm2_dftb_slktrafo.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_slktrafo.o _qm2_dftb_slktrafo.f cpp -traditional -P -DBINTRAJ qm2_dftb_read_cm3.f > _qm2_dftb_read_cm3.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_read_cm3.o _qm2_dftb_read_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_cm3.f > _qm2_dftb_cm3.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_cm3.o _qm2_dftb_cm3.f cpp -traditional -P -DBINTRAJ qm2_dftb_gb.f > _qm2_dftb_gb.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_gb.o _qm2_dftb_gb.f cpp -traditional -P -DBINTRAJ qm2_dftb_3rd_order.f > _qm2_dftb_3rd_order.f gfortran -c -O3 -mtune=generic -ffree-form -o qm2_dftb_3rd_order.o _qm2_dftb_3rd_order.f cd ../lapack; make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/opt/amber11/AmberTools/src/lapack' cd ../blas; make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/opt/amber11/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/opt/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/arpack' cd ../lib; make sys.a make[2]: Entering directory `/opt/amber11/AmberTools/src/lib' ar rv sys.a sys.o wallclock.o random.o veclib.o ar: creating sys.a a - sys.o a - wallclock.o a - random.o a - veclib.o ranlib sys.a make[2]: Leaving directory `/opt/amber11/AmberTools/src/lib' gfortran -o sqm constants.o findmask.o sqm.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_pm6_hof_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o /opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread ../lib/sys.a mv sqm /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/sqm' (cd ptraj && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/ptraj' cd pdb && make make[2]: Entering directory `/opt/amber11/AmberTools/src/ptraj/pdb' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbrun.o pdbrun.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ms.o ms.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o ar: creating libpdb.a a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a mv libpdb.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/ptraj/pdb' cd ../arpack && make make[2]: Entering directory `/opt/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/arpack' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rdparm.o rdparm.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o dispatch.o dispatch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o help.o help.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utility.o utility.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o second.o second.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o io.o io.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o trajectory.o trajectory.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o netcdf_ptraj.o netcdf_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parallel_ptraj.o parallel_ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o evec.o evec.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o torsion.o torsion.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mask.o mask.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rms.o rms.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o interface.o interface.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o energy.o energy.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o experimental.o experimental.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptraj.o ptraj.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o actions.o actions.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o analyze.o analyze.c gfortran -O3 -mtune=generic -ffree-form -c -o thermo.o thermo.f gfortran -O3 -mtune=generic -ffree-form -c -o pubfft.o pubfft.f gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o cluster.o cluster.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o clusterLib.o clusterLib.c gcc -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /opt/amber11/lib/libpdb.a /opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread -lgfortran ../netcdf/lib/libnetcdf.a -lm cd ../lapack; make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/lapack' skipping compilation of LAPACK make[2]: Leaving directory `/opt/amber11/AmberTools/src/lapack' cd ../blas; make skip make[2]: Entering directory `/opt/amber11/AmberTools/src/blas' skipping compilation of BLAS make[2]: Leaving directory `/opt/amber11/AmberTools/src/blas' gcc -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /opt/amber11/lib/libpdb.a /opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread -lgfortran ../netcdf/lib/libnetcdf.a -lm /bin/mv rdparm ptraj /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/ptraj' (cd reduce && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/reduce' installing ./toolclasses... make[2]: Entering directory `/opt/amber11/AmberTools/src/reduce/toolclasses' g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c UseCount.cpp -o UseCount.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Point3d.cpp -o Point3d.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Stringclass.cpp -o Stringclass.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Hash.cpp -o Hash.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c utility.cpp -o utility.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sprintf.cpp -o column_sprintf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sscanf.cpp -o column_sscanf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c DisjointSets.cpp -o DisjointSets.o Loading libtoolclasses.a ... done make[2]: Leaving directory `/opt/amber11/AmberTools/src/reduce/toolclasses' installing ./libpdb... make[2]: Entering directory `/opt/amber11/AmberTools/src/reduce/libpdb' g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_read.cpp -o pdb_read.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sprntf.cpp -o pdb_sprntf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sscanf.cpp -o pdb_sscanf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_chars.cpp -o pdb_chars.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_type.cpp -o pdb_type.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb++.cpp -o pdb++.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdbinput.cpp -o pdbinput.o Loading libpdb++.a ... done make[2]: Leaving directory `/opt/amber11/AmberTools/src/reduce/libpdb' installing ./reduce_src... make[2]: Entering directory `/opt/amber11/AmberTools/src/reduce/reduce_src' g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o reduce.o reduce.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CTab.o CTab.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ElementInfo.o ElementInfo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o StdResH.o StdResH.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ResBlk.o ResBlk.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomConn.o AtomConn.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomPositions.o AtomPositions.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o DotSph.o DotSph.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o Mover.o Mover.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotMethyl.o RotMethyl.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotDonor.o RotDonor.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o FlipMemo.o FlipMemo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CliqueList.o CliqueList.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomDescr.o AtomDescr.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o PDBrec.o PDBrec.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o MoveableNode.o MoveableNode.cpp gcc -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/opt/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -c -o hybrid_36_c.o hybrid_36_c.c g++ -o reduce GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o AtomConn.o AtomPositions.o DotSph.o Mover.o RotMethyl.o RotDonor.o FlipMemo.o CliqueList.o AtomDescr.o PDBrec.o MoveableNode.o hybrid_36_c.o -L../libpdb -lpdb++ -L../toolclasses -ltoolclasses -lm mv reduce /opt/amber11/bin gunzip -c -d ../reduce_wwPDB_het_dict.txt.gz > /opt/amber11/dat/reduce_wwPDB_het_dict.txt make[2]: Leaving directory `/opt/amber11/AmberTools/src/reduce/reduce_src' make[1]: Leaving directory `/opt/amber11/AmberTools/src/reduce' (cd leap && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/leap' Compiling basic programs cd src/leap && make installteLeap make[2]: Entering directory `/opt/amber11/AmberTools/src/leap/src/leap' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o basics.o basics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sysdepend.o sysdepend.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringExtra.o stringExtra.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o varArray.o varArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o getline.o getline.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o avl.o avl.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_format.o pdb_format.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o vector.o vector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o zMatrix.o zMatrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sort.o sort.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o bag.o bag.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hash.o hash.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dictionary.o dictionary.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nVector.o nVector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ring.o ring.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matrix.o matrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fortran.o fortran.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o displayer.o displayer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o assoc.o assoc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o atom.o atom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o byteArray.o byteArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o collection.o collection.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o container.o container.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o internal.o internal.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o list.o list.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o loop.o loop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molecule.o molecule.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oDouble.o oDouble.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oInteger.o oInteger.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oString.o oString.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o objekt.o objekt.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmSet.o parmSet.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o residue.o residue.c residue.c: In function ‘ResidueConnect’: residue.c:336: warning: passing argument 1 of ‘AtomBondTo’ from incompatible pointer type atom.h:300: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c:336: warning: passing argument 2 of ‘AtomBondTo’ from incompatible pointer type atom.h:300: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c: In function ‘ResidueMutate’: residue.c:464: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type build.h:57: note: expected ‘UNIT’ but argument is of type ‘RESIDUE’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unit.o unit.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unitio.o unitio.c unitio.c: In function ‘zUnitIOSaveAmberParmFormat’: unitio.c:4056: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:4056: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c: In function ‘zUnitIOSaveAmberParmFormat_old’: unitio.c:6073: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:6073: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tripos.o tripos.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o graphUtil.o graphUtil.c graphUtil.c: In function ‘GraphUtilFindAllSmallestRingsAndRingGroups’: graphUtil.c:675: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘struct RINGSORTt *’ graphUtil.c:675: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select.o select.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o amber.o amber.c amber.c: In function ‘uAmberReadUnitFromPrep’: amber.c:986: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘struct INPUTLINEt *’ amber.c:986: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o build.o build.c build.c: In function ‘bBuildFlipChiralityFor’: build.c:1901: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘struct COUNTATOMSt *’ build.c:1901: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type sort.h:46: note: expected ‘GENP’ but argument is of type ‘int *’ build.c:1907: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRings’ from incompatible pointer type graphUtil.h:59: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ build.c: In function ‘BuildInternalsForSimpleRings’: build.c:2185: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRingsAndRingGroups’ from incompatible pointer type graphUtil.h:56: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o elements.o elements.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o library.o library.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirality.o chirality.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o minimizer.o minimizer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o model.o model.c model.c: In function ‘zModelOrderAtoms’: model.c:497: warning: passing argument 1 of ‘Sift’ from incompatible pointer type sort.h:55: note: expected ‘GENP’ but argument is of type ‘struct MODELATOMt *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmLib.o parmLib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbFile.o pdbFile.c pdbFile.c: In function ‘zPdbBuildCoordinatesForContainer’: pdbFile.c:1071: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type build.h:57: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ pdbFile.c: In function ‘zPdbAddAtom’: pdbFile.c:1190: warning: passing argument 1 of ‘BuildInternalsForContainer’ from incompatible pointer type build.h:54: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ pdbFile.c: In function ‘writeTER’: pdbFile.c:1744: warning: initialization from incompatible pointer type gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mol2File.o mol2File.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tools.o tools.c tools.c: In function ‘iToolDistanceSearch’: tools.c:1648: warning: passing argument 1 of ‘SortByDouble’ from incompatible pointer type sort.h:48: note: expected ‘GENP’ but argument is of type ‘struct PAIRt *’ tools.c:1648: warning: passing argument 4 of ‘SortByDouble’ from incompatible pointer type sort.h:48: note: expected ‘GENP’ but argument is of type ‘double *’ tools.c: In function ‘ToolOrientPrincipleAxisAlongCoordinateAxis’: tools.c:1719: warning: passing argument 2 of ‘MathOpDiagonalize’ from incompatible pointer type mathop.h:48: note: expected ‘VECTORASPTR’ but argument is of type ‘struct VECTOR *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o variables.o variables.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parser.o parser.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o help.o help.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o utilMakeHelp.o utilMakeHelp.c gcc -o utilMakeHelp basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o utilMakeHelp.o -lm ./utilMakeHelp helptext.text helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o helptext.o helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o octree.o octree.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o commands.o commands.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mathop.o mathop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o block.o block.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o restraint.o restraint.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hybrid.o hybrid.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tLeap.o tLeap.c gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm mv teLeap /opt/amber11/bin make[2]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/leap' Copying shell script cp tleap /opt/amber11/bin/tleap chmod +x /opt/amber11/bin/tleap make install_xleap make[2]: Entering directory `/opt/amber11/AmberTools/src/leap' cd src/Wc && make make[3]: Entering directory `/opt/amber11/AmberTools/src/leap/src/Wc' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MapAg.o MapAg.c MapAg.c: In function ‘MapAg_FirstGuessAtHashAlgorithm’: MapAg.c:191: warning: cast from pointer to integer of different size MapAg.c:210: warning: cast from pointer to integer of different size MapAg.c:227: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_ReHashUnderCollisionLimit’: MapAg.c:290: warning: cast from pointer to integer of different size MapAg.c:290: warning: cast from pointer to integer of different size MapAg.c:290: warning: cast from pointer to integer of different size MapAg.c:309: warning: cast from pointer to integer of different size MapAg.c:309: warning: cast from pointer to integer of different size MapAg.c:309: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_ReHash’: MapAg.c:349: warning: cast from pointer to integer of different size MapAg.c:349: warning: cast from pointer to integer of different size MapAg.c:349: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_Find_Normal’: MapAg.c:455: warning: cast from pointer to integer of different size MapAg.c:455: warning: cast from pointer to integer of different size MapAg.c:455: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_Define_Initial’: MapAg.c:492: warning: cast from pointer to integer of different size MapAg.c:492: warning: cast from pointer to integer of different size MapAg.c:492: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_Define_Normal’: MapAg.c:505: warning: cast from pointer to integer of different size MapAg.c:505: warning: cast from pointer to integer of different size MapAg.c:505: warning: cast from pointer to integer of different size MapAg.c:527: warning: cast from pointer to integer of different size MapAg.c:527: warning: cast from pointer to integer of different size MapAg.c:527: warning: cast from pointer to integer of different size MapAg.c:532: warning: cast from pointer to integer of different size MapAg.c:532: warning: cast from pointer to integer of different size MapAg.c:532: warning: cast from pointer to integer of different size MapAg.c: In function ‘MapAg_Forget_Normal’: MapAg.c:608: warning: cast from pointer to integer of different size MapAg.c:608: warning: cast from pointer to integer of different size MapAg.c:608: warning: cast from pointer to integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcActCB.o WcActCB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcConvert.o WcConvert.c WcConvert.c: In function ‘WcxClosureFromSeg’: WcConvert.c:504: warning: cast to pointer from integer of different size WcConvert.c:510: warning: cast to pointer from integer of different size WcConvert.c: In function ‘WcxBuildCallbackList’: WcConvert.c:592: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcCreate.o WcCreate.c WcCreate.c: In function ‘WcxCreateFromQuark’: WcCreate.c:321: warning: cast to pointer from integer of different size WcCreate.c:323: warning: cast to pointer from integer of different size WcCreate.c:350: warning: cast to pointer from integer of different size WcCreate.c:352: warning: cast to pointer from integer of different size WcCreate.c:354: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcInvoke.o WcInvoke.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLateBind.o WcLateBind.c WcLateBind.c: In function ‘WcxLateBinder_BindFromRegistration’: WcLateBind.c:394: warning: cast to pointer from integer of different size WcLateBind.c:394: warning: cast to pointer from integer of different size WcLateBind.c:400: warning: cast to pointer from integer of different size WcLateBind.c: In function ‘WcxFindObject_DefaultSearch’: WcLateBind.c:434: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLoadRes.o WcLoadRes.c WcLoadRes.c: In function ‘WcLoadResourceFile’: WcLoadRes.c:145: warning: cast to pointer from integer of different size WcLoadRes.c:150: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcName.o WcName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcReg.o WcReg.c WcReg.c: In function ‘WcRegisterClassPtr’: WcReg.c:47: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcRegisterClassName’: WcReg.c:55: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcRegisterConstructor’: WcReg.c:69: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcRegisterDynamicLibs’: WcReg.c:125: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcRegisterCallback’: WcReg.c:169: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcRegisterMethod’: WcReg.c:203: warning: cast to pointer from integer of different size WcReg.c:203: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcAttachThisToWidget’: WcReg.c:227: warning: cast to pointer from integer of different size WcReg.c: In function ‘WcDetachThisFromWidget’: WcReg.c:239: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcRegXt.o WcRegXt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcSetValue.o WcSetValue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcTemplate.o WcTemplate.c WcTemplate.c: In function ‘WcxDumpEntry’: WcTemplate.c:285: warning: cast from pointer to integer of different size WcTemplate.c:288: warning: cast from pointer to integer of different size WcTemplate.c: In function ‘WcTemplateInitialize’: WcTemplate.c:476: warning: cast to pointer from integer of different size WcTemplate.c:476: warning: cast from pointer to integer of different size WcTemplate.c:493: warning: cast to pointer from integer of different size WcTemplate.c:507: warning: cast to pointer from integer of different size WcTemplate.c: In function ‘WcApplyTemplate’: WcTemplate.c:645: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcWarn.o WcWarn.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcNameWidget.o WcNameWidget.c ar rv libWcLeap.a MapAg.o WcActCB.o WcConvert.o WcCreate.o WcInvoke.o WcLateBind.o WcLoadRes.o WcName.o WcReg.o WcRegXt.o WcSetValue.o WcTemplate.o WcWarn.o WcNameWidget.o ar: creating libWcLeap.a a - MapAg.o a - WcActCB.o a - WcConvert.o a - WcCreate.o a - WcInvoke.o a - WcLateBind.o a - WcLoadRes.o a - WcName.o a - WcReg.o a - WcRegXt.o a - WcSetValue.o a - WcTemplate.o a - WcWarn.o a - WcNameWidget.o ranlib libWcLeap.a make[3]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/Wc' cd src/Xmu && make make[3]: Entering directory `/opt/amber11/AmberTools/src/leap/src/Xmu' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllCmap.o AllCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Atoms.o Atoms.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ClientWin.o ClientWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clip.o Clip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CloseHook.o CloseHook.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CmapAlloc.o CmapAlloc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrCmap.o CrCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrPixFBit.o CrPixFBit.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CursorName.o CursorName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtCache.o CvtCache.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtStdSel.o CvtStdSel.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DefErrMsg.o DefErrMsg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DelCmap.o DelCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DisplayQue.o DisplayQue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Distinct.o Distinct.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrawLogo.o DrawLogo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrRndRect.o DrRndRect.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o EditresCom.o EditresCom.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ExtAgent.o ExtAgent.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FToCback.o FToCback.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GetHost.o GetHost.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GrayPixmap.o GrayPixmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Initer.o Initer.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LocBitmap.o LocBitmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lookup.o Lookup.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LookupCmap.o LookupCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lower.o Lower.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RdBitF.o RdBitF.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrOfWin.o ScrOfWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ShapeWidg.o ShapeWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdCmap.o StdCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBS.o StrToBS.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBmap.o StrToBmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToCurs.o StrToCurs.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToGrav.o StrToGrav.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToJust.o StrToJust.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToLong.o StrToLong.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToOrnt.o StrToOrnt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToShap.o StrToShap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToWidg.o StrToWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o UpdMapHint.o UpdMapHint.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o VisCmap.o VisCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WidgetNode.o WidgetNode.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Xct.o Xct.c ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o ar: creating libXmu.a a - AllCmap.o a - Atoms.o a - ClientWin.o a - Clip.o a - CloseHook.o a - CmapAlloc.o a - CrCmap.o a - CrPixFBit.o a - CursorName.o a - CvtCache.o a - CvtStdSel.o a - DefErrMsg.o a - DelCmap.o a - DisplayQue.o a - Distinct.o a - DrawLogo.o a - DrRndRect.o a - EditresCom.o a - ExtAgent.o a - FToCback.o a - GetHost.o a - GrayPixmap.o a - Initer.o a - LocBitmap.o a - Lookup.o a - LookupCmap.o a - Lower.o a - RdBitF.o a - ScrOfWin.o a - ShapeWidg.o a - StdCmap.o a - StrToBS.o a - StrToBmap.o a - StrToCurs.o a - StrToGrav.o a - StrToJust.o a - StrToLong.o a - StrToOrnt.o a - StrToShap.o a - StrToWidg.o a - UpdMapHint.o a - VisCmap.o a - WidgetNode.o a - Xct.o ranlib libXmu.a make[3]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/Xmu' cd src/Xpm && make make[3]: Entering directory `/opt/amber11/AmberTools/src/leap/src/Xpm' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o data.o data.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o create.o create.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o misc.o misc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rgb.o rgb.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o scan.o scan.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parse.o parse.c parse.c: In function ‘ParseColors’: parse.c:317: warning: cast to pointer from integer of different size parse.c:399: warning: cast to pointer from integer of different size parse.c: In function ‘ParsePixels’: parse.c:526: warning: cast from pointer to integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o hashtable.o hashtable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrI.o XpmCrBufFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrP.o XpmCrDataFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrBuf.o XpmCrPFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToI.o XpmRdFToI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrI.o XpmWrFFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrP.o XpmCrBufFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrBuf.o XpmCrIFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrData.o XpmCrPFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToP.o XpmRdFToP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrP.o XpmWrFFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrI.o XpmCrDataFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrData.o XpmCrIFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToData.o XpmRdFToData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrData.o XpmWrFFrData.c ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o ar: creating libXpm.a a - data.o a - create.o a - misc.o a - rgb.o a - scan.o a - parse.o a - hashtable.o a - XpmCrBufFrI.o a - XpmCrDataFrP.o a - XpmCrPFrBuf.o a - XpmRdFToI.o a - XpmWrFFrI.o a - XpmCrBufFrP.o a - XpmCrIFrBuf.o a - XpmCrPFrData.o a - XpmRdFToP.o a - XpmWrFFrP.o a - XpmCrDataFrI.o a - XpmCrIFrData.o a - XpmRdFToData.o a - XpmWrFFrData.o ranlib libXpm.a make[3]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/Xpm' cd src/Xraw && make make[3]: Entering directory `/opt/amber11/AmberTools/src/leap/src/Xraw' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o 3d.o 3d.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllWidgets.o AllWidgets.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Arrow.o Arrow.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSink.o AsciiSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSrc.o AsciiSrc.c AsciiSrc.c: In function ‘MyStrncpy’: AsciiSrc.c:1181: warning: cast from pointer to integer of different size AsciiSrc.c:1181: warning: cast from pointer to integer of different size AsciiSrc.c:1181: warning: cast from pointer to integer of different size AsciiSrc.c:1181: warning: cast from pointer to integer of different size AsciiSrc.c:1185: warning: cast from pointer to integer of different size AsciiSrc.c:1185: warning: cast from pointer to integer of different size AsciiSrc.c:1185: warning: cast from pointer to integer of different size AsciiSrc.c:1185: warning: cast from pointer to integer of different size AsciiSrc.c:1192: warning: cast from pointer to integer of different size AsciiSrc.c:1192: warning: cast from pointer to integer of different size AsciiSrc.c:1192: warning: cast from pointer to integer of different size AsciiSrc.c:1192: warning: cast from pointer to integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiText.o AsciiText.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Box.o Box.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clock.o Clock.c Clock.c:48: warning: conflicting types for built-in function ‘round’ gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Command.o Command.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o color.o color.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Container.o Container.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Dialog.o Dialog.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Form.o Form.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Grip.o Grip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Label.o Label.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o List.o List.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Logo.o Logo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MenuButton.o MenuButton.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Paned.o Paned.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Panner.o Panner.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Porthole.o Porthole.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Repeater.o Repeater.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Scrollbar.o Scrollbar.c Scrollbar.c: In function ‘Release’: Scrollbar.c:1333: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrolledTable.o ScrolledTable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Separator.o Separator.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Simple.o Simple.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SimpleMenu.o SimpleMenu.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Sme.o Sme.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeBSB.o SmeBSB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeLine.o SmeLine.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StripChart.o StripChart.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o table.o table.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Table2.o Table2.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Text.o Text.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSink.o TextSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSrc.o TextSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextAction.o TextAction.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextPop.o TextPop.c TextPop.c: In function ‘DoSearch’: TextPop.c:795: warning: cast from pointer to integer of different size TextPop.c: In function ‘Replace’: TextPop.c:925: warning: cast from pointer to integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextTr.o TextTr.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Toggle.o Toggle.c Toggle.c: In function ‘Notify’: Toggle.c:422: warning: cast to pointer from integer of different size gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Tree.o Tree.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Vendor.o Vendor.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Viewport.o Viewport.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XawInit.o XawInit.c ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o ar: creating libXaw.a a - 3d.o a - AllWidgets.o a - Arrow.o a - AsciiSink.o a - AsciiSrc.o a - AsciiText.o a - Box.o a - Clock.o a - Command.o a - color.o a - Container.o a - Dialog.o a - Form.o a - Frame.o a - Grip.o a - Label.o a - List.o a - Logo.o a - MenuButton.o a - Paned.o a - Panner.o a - Porthole.o a - Repeater.o a - Scrollbar.o a - ScrolledTable.o a - Separator.o a - Simple.o a - SimpleMenu.o a - Sme.o a - SmeBSB.o a - SmeLine.o a - StripChart.o a - table.o a - Table2.o a - Text.o a - TextSink.o a - TextSrc.o a - TextAction.o a - TextPop.o a - TextTr.o a - Toggle.o a - Tree.o a - Vendor.o a - Viewport.o a - XawInit.o ranlib libXaw.a make[3]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/Xraw' cd src/leap && make install make[3]: Entering directory `/opt/amber11/AmberTools/src/leap/src/leap' gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xAction.o xAction.c xAction.c: In function ‘zActionTwistTorsions’: xAction.c:1112: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type build.h:68: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o x3d.o x3d.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xBasics.o xBasics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaLeapc.o xaLeapc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaUnitEditor.o xaUnitEditor.c xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’: xaUnitEditor.c:888: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type build.h:75: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’: xaUnitEditor.c:1335: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type build.h:71: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTable.o xaTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomTable.o xaAtomTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o XrawRegistr.o XrawRegistr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaCommand.o xaCommand.c xaCommand.c: In function ‘xtcpXACInitializeDirectoryList’: xaCommand.c:840: warning: passing argument 4 of ‘qsort’ from incompatible pointer type /usr/include/stdlib.h:756: note: expected ‘__compar_fn_t’ but argument is of type ‘int (*)(void *, void *)’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTools.o xaTools.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomParmTable.o xaAtomParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaBondParmTable.o xaBondParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAngleParmTable.o xaAngleParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaParmEditor.o xaParmEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTorsionParmTable.o xaTorsionParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaImproperParmTable.o xaImproperParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaHBondParmTable.o xaHBondParmTable.c gcc -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp -lm -lpthread ../Xraw/libXaw.a(AsciiSrc.o): In function `InitStringOrFile': AsciiSrc.c:(.text+0x133b): warning: the use of `tmpnam' is dangerous, better use `mkstemp' m4 xaLeap.rm4 > XaLeap_wcl mv teLeap xaLeap /opt/amber11/bin mv XaLeap_wcl /opt/amber11/dat make[3]: Leaving directory `/opt/amber11/AmberTools/src/leap/src/leap' Copying shell script cp xleap /opt/amber11/bin/xleap chmod +x /opt/amber11/bin/xleap Copying pixmaps mkdir /opt/amber11/dat/pixmap cd pixmap; /bin/cp * /opt/amber11/dat/pixmap Finished with the install of LEaP make[2]: Leaving directory `/opt/amber11/AmberTools/src/leap' make[1]: Leaving directory `/opt/amber11/AmberTools/src/leap' (cd gleap && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/gleap' cd freelib && make make[2]: Entering directory `/opt/amber11/AmberTools/src/gleap/freelib' cd readline && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/freelib/readline' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o bind.o bind.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o callback.o callback.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o compat.o compat.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o complete.o complete.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o funmap.o funmap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histexpand.o histexpand.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histfile.o histfile.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o history.o history.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histsearch.o histsearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o input.o input.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o isearch.o isearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o keymaps.o keymaps.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o kill.o kill.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o macro.o macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o mbutil.o mbutil.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o misc.o misc.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o nls.o nls.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o parens.o parens.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o readline.o readline.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o rltty.o rltty.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o savestring.o savestring.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o search.o search.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o shell.o shell.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o signals.o signals.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o termcap.o termcap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o terminal.o terminal.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o text.o text.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tilde.o tilde.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tparam.o tparam.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o undo.o undo.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o util.o util.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o version.o version.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o vi_mode.o vi_mode.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o xmalloc.o xmalloc.c rm -f libreadline.a ar cqs libreadline.a bind.o callback.o compat.o complete.o display.o funmap.o histexpand.o histfile.o history.o histsearch.o input.o isearch.o keymaps.o kill.o macro.o mbutil.o misc.o nls.o parens.o readline.o rltty.o savestring.o search.o shell.o signals.o termcap.o terminal.o text.o tilde.o tparam.o undo.o util.o version.o vi_mode.o xmalloc.o make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/freelib/readline' make[2]: Leaving directory `/opt/amber11/AmberTools/src/gleap/freelib' cd mortsrc && make make[2]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc' cd common && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/common' g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o numvec.o numvec.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o matrix.o matrix.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o pertab.o pertab.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o fortran.o fortran.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o stralgo.o stralgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o crdalgo.o crdalgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o funstack.o funstack.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o geometry.o geometry.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -I../../freelib -o hashcode.o hashcode.cpp rm -f libcommon.a ar cqs libcommon.a numvec.o matrix.o pertab.o fortran.o stralgo.o crdalgo.o funstack.o geometry.o hashcode.o make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/common' cd object && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/object' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o angl.o angl.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o dihe.o dihe.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o impr.o impr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atmv.o atmv.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o rela.o rela.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o data.o data.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o comp.o comp.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o root.o root.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o mole.o mole.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o morf.o morf.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/object' cd objfun && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/objfun' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o wrapper.o wrapper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o atomfun.o atomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o bondfun.o bondfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o fixbond.o fixbond.cpp fixbond.cpp:471: warning: unused parameter ‘atms’ g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o geomfun.o geomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o hydrfun.o hydrfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I.. -I../../freelib -o parmfun.o parmfun.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/objfun' cd ambfmt && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/ambfmt' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o ambfrc-amoeba.o ambfrc-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o amboff.o amboff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o chain.o chain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o energee.o energee.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o exclude.o exclude.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o extent.o extent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o les.o les.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o parm.o parm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o parmset.o parmset.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prep.o prep.cpp /usr/lib/gcc/x86_64-redhat-linux/4.4.3/../../../../include/c++/4.4.3/bits/stl_algo.h: In function ‘int mort::get_nunfill(const std::string&)’: /usr/lib/gcc/x86_64-redhat-linux/4.4.3/../../../../include/c++/4.4.3/bits/stl_algo.h:194: warning: array subscript is above array bounds g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prmtop-amoeba.o prmtop-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o prmtop.o prmtop.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/ambfmt' cd atmask && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/atmask' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o condition.o condition.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o dist.o dist.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o logic.o logic.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mask.o mask.cpp mask.cpp: In constructor ‘mort::atmask::node_i::node_i(bool)’: mask.cpp:43: warning: the address of ‘std::vector >* insts()’ will never be NULL g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o paren.o paren.cpp paren.cpp:14: warning: unused parameter ‘mol’ g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/atmask' cd capbox && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/capbox' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o octree.o octree.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o shaper.o shaper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solute.o solute.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solvate.o solvate.cpp solvate.cpp: In function ‘void mort::solvate(mort::solute_i&, const mort::molecule_t&, const mort::region_i&)’: solvate.cpp:68: warning: unused variable ‘svt_maxrad’ g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o solvent.o solvent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o region.o region.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/capbox' cd enefrc && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/enefrc' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o bonding.o bonding.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o ctrlparm.o ctrlparm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-lst.o nonbond-lst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-egb.o nonbond-egb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -I.. -I../../freelib -I. -o nonbond-pbc.o nonbond-pbc.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/enefrc' cd guilib && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/guilib' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o command.o command.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o console.o console.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o control.o control.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o grammar.o grammar.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o leaplog.o leaplog.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mainwin.o mainwin.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/guilib' cd format && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/format' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mol.o mol.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mdb.o mdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o ext.o ext.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o frc.o frc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o top.o top.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o sdf.o sdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o xyz.o xyz.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/format' cd smarts && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/smarts' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o parse.o parse.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o reader.o reader.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o status.o status.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o finder.o finder.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atomexpr.o atomexpr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o tyrule.o tyrule.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o ring.o ring.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o subst.o subst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o smarts.o smarts.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/smarts' cd tripos && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/tripos' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o head.o head.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o sect.o sect.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mol2.o mol2.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/tripos' cd pdbent && make make[3]: Entering directory `/opt/amber11/AmberTools/src/gleap/mortsrc/pdbent' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o mdlize.o mdlize.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o second.o second.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o pdbent.o pdbent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -I. -I.. -I../../freelib -o namemap.o namemap.cpp make[3]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc/pdbent' rm -f libmort.a ar cqs libmort.a ambfmt/ambfrc-amoeba.o ambfmt/amboff.o ambfmt/chain.o ambfmt/energee.o ambfmt/exclude.o ambfmt/extent.o ambfmt/les.o ambfmt/parm.o ambfmt/parmset.o ambfmt/prep.o ambfmt/prmtop-amoeba.o ambfmt/prmtop.o atmask/atom.o atmask/condition.o atmask/dist.o atmask/logic.o atmask/mask.o atmask/paren.o atmask/resd.o capbox/addions.o capbox/octree.o capbox/shaper.o capbox/solute.o capbox/solvate.o capbox/solvent.o capbox/region.o common/numvec.o common/matrix.o common/pertab.o common/fortran.o common/stralgo.o common/crdalgo.o common/funstack.o common/geometry.o common/hashcode.o enefrc/bonding.o enefrc/ctrlparm.o enefrc/nonbond-lst.o enefrc/nonbond-egb.o enefrc/nonbond-pbc.o format/mol.o format/mdb.o format/ext.o format/frc.o format/top.o format/sdf.o format/xyz.o guilib/command.o guilib/console.o guilib/control.o guilib/grammar.o guilib/leaplog.o guilib/mainwin.o guilib/leaplog.o object/atom.o object/angl.o object/bond.o object/dihe.o object/impr.o object/resd.o object/atmv.o object/rela.o object/data.o object/comp.o object/root.o object/mole.o object/morf.o objfun/wrapper.o objfun/atomfun.o objfun/bondfun.o objfun/fixbond.o objfun/geomfun.o objfun/hydrfun.o objfun/merge.o objfun/parmfun.o pdbent/atom.o pdbent/bond.o pdbent/resd.o pdbent/mdlize.o pdbent/second.o pdbent/pdbent.o pdbent/namemap.o smarts/parse.o smarts/reader.o smarts/status.o smarts/finder.o smarts/atomexpr.o smarts/tyrule.o smarts/ring.o smarts/subst.o smarts/smarts.o tripos/atom.o tripos/bond.o tripos/head.o tripos/resd.o tripos/sect.o tripos/mol2.o make[2]: Leaving directory `/opt/amber11/AmberTools/src/gleap/mortsrc' cd plugins && make make[2]: Entering directory `/opt/amber11/AmberTools/src/gleap/plugins' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o add.o add.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addmap.o addmap.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o center.o center.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o charge.o charge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o copy.o copy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o create.o create.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o desc.o desc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o delete.o delete.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o energy.o energy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o geom.o geom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o help.o help.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o impose.o impose.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o list.o list.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadcrd.o loadcrd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadfrc.o loadfrc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadmol2.o loadmol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadoff.o loadoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadpdb.o loadpdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadprep.o loadprep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadsdf.o loadsdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o measure.o measure.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o merge.o merge.cpp merge.cpp:103: warning: unused parameter ‘prev’ g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o moloper.o moloper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savemol2.o savemol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveoff.o saveoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savepdb.o savepdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveprm.o saveprm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savesdf.o savesdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o set.o set.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o shell.o shell.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o source.o source.cpp g++ -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -c -o transform.o transform.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o zmatrix.o zmatrix.cpp rm -f libplugins.a ar cqs libplugins.a add.o addmap.o addions.o bond.o center.o charge.o copy.o create.o desc.o delete.o energy.o geom.o help.o impose.o list.o loadcrd.o loadfrc.o loadmol2.o loadoff.o loadpdb.o loadprep.o loadsdf.o measure.o merge.o moloper.o savemol2.o saveoff.o savepdb.o saveprm.o savesdf.o set.o shell.o solvate.o source.o transform.o zmatrix.o make[2]: Leaving directory `/opt/amber11/AmberTools/src/gleap/plugins' cd leapsrc && make install make[2]: Entering directory `/opt/amber11/AmberTools/src/gleap/leapsrc' g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strmain.o strmain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o plugins.o plugins.cpp g++ -static-libgcc -o sleap strmain.o strbuff.o plugins.o ../freelib/readline/libreadline.a -lm ../plugins/libplugins.a ../mortsrc/libmort.a mv sleap /opt/amber11/bin make[2]: Leaving directory `/opt/amber11/AmberTools/src/gleap/leapsrc' make[1]: Leaving directory `/opt/amber11/AmberTools/src/gleap' (cd cifparse && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/cifparse' flex -t cifparse.l | sed 's/yy/cifp/g' > lex.cif.c /opt/amber11/bin/yacc -v -d cifparse.y sed 's/yy/cifp/g' < y.tab.c > cifp.tab.c sed 's/yy/cifp/g' < y.tab.h > cifp.tab.h rm -f y.tab.c y.tab.h gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ lex.cif.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex cifp.tab.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ cifparse.c cifparse.c: In function ‘ndb_cif_write_category’: cifparse.c:287: warning: cast from pointer to integer of different size cifparse.c: In function ‘ndb_cif_print_formatted_item_value’: cifparse.c:370: warning: cast from pointer to integer of different size cifparse.c:388: warning: cast from pointer to integer of different size cifparse.c: In function ‘ndb_cif_init’: cifparse.c:470: warning: cast from pointer to integer of different size cifparse.c: In function ‘ndb_cif_new_datablock’: cifparse.c:538: warning: cast from pointer to integer of different size cifparse.c: In function ‘ndb_cif_get_item_value’: cifparse.c:1478: warning: cast from pointer to integer of different size cifparse.c:1497: warning: cast from pointer to integer of different size rm -f cifparse.a ar rv cifparse.a lex.cif.o cifp.tab.o cifparse.o ar: creating cifparse.a a - lex.cif.o a - cifp.tab.o a - cifparse.o ranlib cifparse.a mv cifparse.a /opt/amber11/lib make[1]: Leaving directory `/opt/amber11/AmberTools/src/cifparse' (cd nab && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/nab' gcc -DBINDIR='"."' -DINCDIR='"."' -DLIBDIR='"."' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -DCC='"gcc"' -DCPP='"/opt/amber11/bin/ucpp -l"' -DFLIBS='"/opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread -lgfortran "' -o nab nab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2c.o nab2c.c flex nablex.l /opt/amber11/bin/yacc -d nabgrm.y /opt/amber11/bin/yacc: 3 shift/reduce conflicts. gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o cgen.o cgen.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex y.tab.c (cd ../semantics; make) make[2]: Entering directory `/opt/amber11/AmberTools/src/semantics' gcc -DDATDIR='"/opt/amber11/dat"' -o parse parse.c ./parse *.rules ./parse: 82 symbols. ./parse: 19 types, lastuser = 14, v_error = 14. ./parse: 9 classes. ./parse: 8 kinds. ./parse: 4 accesses. ./parse: 27 attributes. ./parse: 40 rules. ./parse: 40 used symbols. ./parse: 15 used types. ./parse: 7 used classes. ./parse: 7 used kinds. ./parse: 0 errors. make[2]: Leaving directory `/opt/amber11/AmberTools/src/semantics' mv ../semantics/checkexpr.c . gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o checkexpr.o checkexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dumpnode.o dumpnode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o errormsg.o errormsg.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fixexpr.o fixexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o genavscode.o genavscode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o node.o node.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symbol.o symbol.c gcc -o nab2c nab2c.o cgen.o checkexpr.o dumpnode.o errormsg.o fixexpr.o genavscode.o node.o symbol.o y.tab.o cd ../sff; make install make[2]: Entering directory `/opt/amber11/AmberTools/src/sff' gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o binpos.o binpos.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o conjgrad.o conjgrad.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o lmodC.o lmodC.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o memutil.o memutil.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nblist.o nblist.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o newton.o newton.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nmode.o nmode.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o prm.o prm.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o rand2.o rand2.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sasad.o sasad.c flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.mm_options.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sff.o sff.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o time.o time.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o traceback.o traceback.c gcc -c -Dflex -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o xminC.o xminC.c rm -f libsff.a ar rv libsff.a binpos.o conjgrad.o lmodC.o memutil.o nblist.o newton.o nmode.o prm.o rand2.o sasad.o sff.o time.o traceback.o xminC.o ar: creating libsff.a a - binpos.o a - conjgrad.o a - lmodC.o a - memutil.o a - nblist.o a - newton.o a - nmode.o a - prm.o a - rand2.o a - sasad.o a - sff.o a - time.o a - traceback.o a - xminC.o ranlib libsff.a mv libsff.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/sff' cd ../pbsa; make libinstall make[2]: Entering directory `/opt/amber11/AmberTools/src/pbsa' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o interface.o interface.c cpp -traditional -P -DBINTRAJ -DPBSA pbsaapi.f > _pbsaapi.f gfortran -c -O3 -mtune=generic -ffree-form -o pbsaapi.o _pbsaapi.f cpp -traditional -P -DBINTRAJ -DLIBPBSA pb_read.f > _pb_read.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_read.LIBPBSA.o _pb_read.f rm -f libpbsa.a ar rv libpbsa.a interface.o pbsaapi.o myopen.o pb_read.LIBPBSA.o pb_force.o sa_driver.o pb_nlsolver.o pb_lsolver.o dsvdc.o timer.o pb_init.o pb_exmol.o np_force.o pb_direct.o pb_list.o pb_write.o pb_mpfrc.o decomp.o rgroup.o rfree.o ar: creating libpbsa.a a - interface.o a - pbsaapi.o a - myopen.o a - pb_read.LIBPBSA.o a - pb_force.o a - sa_driver.o a - pb_nlsolver.o a - pb_lsolver.o a - dsvdc.o a - timer.o a - pb_init.o a - pb_exmol.o a - np_force.o a - pb_direct.o a - pb_list.o a - pb_write.o a - pb_mpfrc.o a - decomp.o a - rgroup.o a - rfree.o ranlib libpbsa.a /bin/mv libpbsa.a /opt/amber11/lib make[2]: Leaving directory `/opt/amber11/AmberTools/src/pbsa' ./nab -c allatom_to_dna3.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o axis2frame.o axis2frame.c gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ bonded_atoms.c gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DDATDIR='"/opt/amber11/dat"' boundsutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirvol.o chirvol.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o deform_ener.o deform_ener.c ./nab -c dna3.nab ./nab -c dna3_to_allatom.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dump.o dump.c flex -t dg_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/dgo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.dg_options.c gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex embed.c ./nab -c -O0 -DDATDIR='"/opt/amber11/dat"' fd_helix.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o frameutil.o frameutil.c gcc -c -DDATDIR='"/opt/amber11/dat"' getdist.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hashutil.o hashutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o jacobi.o jacobi.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o match.o match.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matop.o matop.c gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ molio.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molsurf.o molsurf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molutil.o molutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2avs.o nab2avs.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2geom.o nab2geom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pointutil.o pointutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o prm.o prm.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o regexp.o regexp.c gcc -c -DDATDIR='"/opt/amber11/dat"' reslib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select_atoms.o select_atoms.c gcc -c -O3 -mtune=generic -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -Dflex mme_init.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringutil.o stringutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o temputil.o temputil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tm_malloc.o tm_malloc.c ./nab -c bdna.nab ./nab -c dg_helix.nab ./nab -c getchivol.nab ./nab -c getres.nab ./nab -c getseq_from_pdb.nab ./nab -c getxyz_from_pdb.nab ./nab -c -DBINDIR='"/opt/amber11/bin"' -DDATDIR='"/opt/amber11/dat"' getpdb_prm.nab ./nab -c getpdb_rlb.nab ./nab -c linkprot.nab ./nab -c link_na.nab ./nab -c -DDATDIR='"/opt/amber11/dat"' na_anal.nab ./nab -c setboundsfromdb.nab ./nab -c setchiplane.nab ./nab -c wc_basepair.nab ./nab -c wc_complement.nab ./nab -c wc_helix.nab ./nab -c yammp.nab if [ "/opt/amber11/lib/libdrfftw.a /opt/amber11/lib/libdfftw.a" = '/opt/amber11/lib/libfftw2xf_gnu.a' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/opt/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi make[2]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5' Making install in fftw make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/fftw' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_1.lo -MD -MP -MF ".deps/fn_1.Tpo" \ -c -o fn_1.lo `test -f 'fn_1.c' || echo './'`fn_1.c; \ then mv ".deps/fn_1.Tpo" ".deps/fn_1.Plo"; \ else rm -f ".deps/fn_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_1.lo -MD -MP -MF .deps/fn_1.Tpo -c fn_1.c -o fn_1.o echo timestamp > fn_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_2.lo -MD -MP -MF ".deps/fn_2.Tpo" \ -c -o fn_2.lo `test -f 'fn_2.c' || echo './'`fn_2.c; \ then mv ".deps/fn_2.Tpo" ".deps/fn_2.Plo"; \ else rm -f ".deps/fn_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_2.lo -MD -MP -MF .deps/fn_2.Tpo -c fn_2.c -o fn_2.o echo timestamp > fn_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_3.lo -MD -MP -MF ".deps/fn_3.Tpo" \ -c -o fn_3.lo `test -f 'fn_3.c' || echo './'`fn_3.c; \ then mv ".deps/fn_3.Tpo" ".deps/fn_3.Plo"; \ else rm -f ".deps/fn_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_3.lo -MD -MP -MF .deps/fn_3.Tpo -c fn_3.c -o fn_3.o echo timestamp > fn_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_4.lo -MD -MP -MF ".deps/fn_4.Tpo" \ -c -o fn_4.lo `test -f 'fn_4.c' || echo './'`fn_4.c; \ then mv ".deps/fn_4.Tpo" ".deps/fn_4.Plo"; \ else rm -f ".deps/fn_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_4.lo -MD -MP -MF .deps/fn_4.Tpo -c fn_4.c -o fn_4.o echo timestamp > fn_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_5.lo -MD -MP -MF ".deps/fn_5.Tpo" \ -c -o fn_5.lo `test -f 'fn_5.c' || echo './'`fn_5.c; \ then mv ".deps/fn_5.Tpo" ".deps/fn_5.Plo"; \ else rm -f ".deps/fn_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_5.lo -MD -MP -MF .deps/fn_5.Tpo -c fn_5.c -o fn_5.o echo timestamp > fn_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_6.lo -MD -MP -MF ".deps/fn_6.Tpo" \ -c -o fn_6.lo `test -f 'fn_6.c' || echo './'`fn_6.c; \ then mv ".deps/fn_6.Tpo" ".deps/fn_6.Plo"; \ else rm -f ".deps/fn_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_6.lo -MD -MP -MF .deps/fn_6.Tpo -c fn_6.c -o fn_6.o echo timestamp > fn_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_7.lo -MD -MP -MF ".deps/fn_7.Tpo" \ -c -o fn_7.lo `test -f 'fn_7.c' || echo './'`fn_7.c; \ then mv ".deps/fn_7.Tpo" ".deps/fn_7.Plo"; \ else rm -f ".deps/fn_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_7.lo -MD -MP -MF .deps/fn_7.Tpo -c fn_7.c -o fn_7.o echo timestamp > fn_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_8.lo -MD -MP -MF ".deps/fn_8.Tpo" \ -c -o fn_8.lo `test -f 'fn_8.c' || echo './'`fn_8.c; \ then mv ".deps/fn_8.Tpo" ".deps/fn_8.Plo"; \ else rm -f ".deps/fn_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_8.lo -MD -MP -MF .deps/fn_8.Tpo -c fn_8.c -o fn_8.o echo timestamp > fn_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_9.lo -MD -MP -MF ".deps/fn_9.Tpo" \ -c -o fn_9.lo `test -f 'fn_9.c' || echo './'`fn_9.c; \ then mv ".deps/fn_9.Tpo" ".deps/fn_9.Plo"; \ else rm -f ".deps/fn_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_9.lo -MD -MP -MF .deps/fn_9.Tpo -c fn_9.c -o fn_9.o echo timestamp > fn_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_10.lo -MD -MP -MF ".deps/fn_10.Tpo" \ -c -o fn_10.lo `test -f 'fn_10.c' || echo './'`fn_10.c; \ then mv ".deps/fn_10.Tpo" ".deps/fn_10.Plo"; \ else rm -f ".deps/fn_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_10.lo -MD -MP -MF .deps/fn_10.Tpo -c fn_10.c -o fn_10.o echo timestamp > fn_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_11.lo -MD -MP -MF ".deps/fn_11.Tpo" \ -c -o fn_11.lo `test -f 'fn_11.c' || echo './'`fn_11.c; \ then mv ".deps/fn_11.Tpo" ".deps/fn_11.Plo"; \ else rm -f ".deps/fn_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_11.lo -MD -MP -MF .deps/fn_11.Tpo -c fn_11.c -o fn_11.o echo timestamp > fn_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_12.lo -MD -MP -MF ".deps/fn_12.Tpo" \ -c -o fn_12.lo `test -f 'fn_12.c' || echo './'`fn_12.c; \ then mv ".deps/fn_12.Tpo" ".deps/fn_12.Plo"; \ else rm -f ".deps/fn_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_12.lo -MD -MP -MF .deps/fn_12.Tpo -c fn_12.c -o fn_12.o echo timestamp > fn_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_13.lo -MD -MP -MF ".deps/fn_13.Tpo" \ -c -o fn_13.lo `test -f 'fn_13.c' || echo './'`fn_13.c; \ then mv ".deps/fn_13.Tpo" ".deps/fn_13.Plo"; \ else rm -f ".deps/fn_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_13.lo -MD -MP -MF .deps/fn_13.Tpo -c fn_13.c -o fn_13.o echo timestamp > fn_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_14.lo -MD -MP -MF ".deps/fn_14.Tpo" \ -c -o fn_14.lo `test -f 'fn_14.c' || echo './'`fn_14.c; \ then mv ".deps/fn_14.Tpo" ".deps/fn_14.Plo"; \ else rm -f ".deps/fn_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_14.lo -MD -MP -MF .deps/fn_14.Tpo -c fn_14.c -o fn_14.o echo timestamp > fn_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_15.lo -MD -MP -MF ".deps/fn_15.Tpo" \ -c -o fn_15.lo `test -f 'fn_15.c' || echo './'`fn_15.c; \ then mv ".deps/fn_15.Tpo" ".deps/fn_15.Plo"; \ else rm -f ".deps/fn_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_15.lo -MD -MP -MF .deps/fn_15.Tpo -c fn_15.c -o fn_15.o echo timestamp > fn_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_16.lo -MD -MP -MF ".deps/fn_16.Tpo" \ -c -o fn_16.lo `test -f 'fn_16.c' || echo './'`fn_16.c; \ then mv ".deps/fn_16.Tpo" ".deps/fn_16.Plo"; \ else rm -f ".deps/fn_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_16.lo -MD -MP -MF .deps/fn_16.Tpo -c fn_16.c -o fn_16.o echo timestamp > fn_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_32.lo -MD -MP -MF ".deps/fn_32.Tpo" \ -c -o fn_32.lo `test -f 'fn_32.c' || echo './'`fn_32.c; \ then mv ".deps/fn_32.Tpo" ".deps/fn_32.Plo"; \ else rm -f ".deps/fn_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_32.lo -MD -MP -MF .deps/fn_32.Tpo -c fn_32.c -o fn_32.o echo timestamp > fn_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_64.lo -MD -MP -MF ".deps/fn_64.Tpo" \ -c -o fn_64.lo `test -f 'fn_64.c' || echo './'`fn_64.c; \ then mv ".deps/fn_64.Tpo" ".deps/fn_64.Plo"; \ else rm -f ".deps/fn_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fn_64.lo -MD -MP -MF .deps/fn_64.Tpo -c fn_64.c -o fn_64.o echo timestamp > fn_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_2.lo -MD -MP -MF ".deps/ftw_2.Tpo" \ -c -o ftw_2.lo `test -f 'ftw_2.c' || echo './'`ftw_2.c; \ then mv ".deps/ftw_2.Tpo" ".deps/ftw_2.Plo"; \ else rm -f ".deps/ftw_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_2.lo -MD -MP -MF .deps/ftw_2.Tpo -c ftw_2.c -o ftw_2.o echo timestamp > ftw_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_3.lo -MD -MP -MF ".deps/ftw_3.Tpo" \ -c -o ftw_3.lo `test -f 'ftw_3.c' || echo './'`ftw_3.c; \ then mv ".deps/ftw_3.Tpo" ".deps/ftw_3.Plo"; \ else rm -f ".deps/ftw_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_3.lo -MD -MP -MF .deps/ftw_3.Tpo -c ftw_3.c -o ftw_3.o echo timestamp > ftw_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_4.lo -MD -MP -MF ".deps/ftw_4.Tpo" \ -c -o ftw_4.lo `test -f 'ftw_4.c' || echo './'`ftw_4.c; \ then mv ".deps/ftw_4.Tpo" ".deps/ftw_4.Plo"; \ else rm -f ".deps/ftw_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_4.lo -MD -MP -MF .deps/ftw_4.Tpo -c ftw_4.c -o ftw_4.o echo timestamp > ftw_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_5.lo -MD -MP -MF ".deps/ftw_5.Tpo" \ -c -o ftw_5.lo `test -f 'ftw_5.c' || echo './'`ftw_5.c; \ then mv ".deps/ftw_5.Tpo" ".deps/ftw_5.Plo"; \ else rm -f ".deps/ftw_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_5.lo -MD -MP -MF .deps/ftw_5.Tpo -c ftw_5.c -o ftw_5.o echo timestamp > ftw_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_6.lo -MD -MP -MF ".deps/ftw_6.Tpo" \ -c -o ftw_6.lo `test -f 'ftw_6.c' || echo './'`ftw_6.c; \ then mv ".deps/ftw_6.Tpo" ".deps/ftw_6.Plo"; \ else rm -f ".deps/ftw_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_6.lo -MD -MP -MF .deps/ftw_6.Tpo -c ftw_6.c -o ftw_6.o echo timestamp > ftw_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_7.lo -MD -MP -MF ".deps/ftw_7.Tpo" \ -c -o ftw_7.lo `test -f 'ftw_7.c' || echo './'`ftw_7.c; \ then mv ".deps/ftw_7.Tpo" ".deps/ftw_7.Plo"; \ else rm -f ".deps/ftw_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_7.lo -MD -MP -MF .deps/ftw_7.Tpo -c ftw_7.c -o ftw_7.o echo timestamp > ftw_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_8.lo -MD -MP -MF ".deps/ftw_8.Tpo" \ -c -o ftw_8.lo `test -f 'ftw_8.c' || echo './'`ftw_8.c; \ then mv ".deps/ftw_8.Tpo" ".deps/ftw_8.Plo"; \ else rm -f ".deps/ftw_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_8.lo -MD -MP -MF .deps/ftw_8.Tpo -c ftw_8.c -o ftw_8.o echo timestamp > ftw_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_9.lo -MD -MP -MF ".deps/ftw_9.Tpo" \ -c -o ftw_9.lo `test -f 'ftw_9.c' || echo './'`ftw_9.c; \ then mv ".deps/ftw_9.Tpo" ".deps/ftw_9.Plo"; \ else rm -f ".deps/ftw_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_9.lo -MD -MP -MF .deps/ftw_9.Tpo -c ftw_9.c -o ftw_9.o echo timestamp > ftw_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_10.lo -MD -MP -MF ".deps/ftw_10.Tpo" \ -c -o ftw_10.lo `test -f 'ftw_10.c' || echo './'`ftw_10.c; \ then mv ".deps/ftw_10.Tpo" ".deps/ftw_10.Plo"; \ else rm -f ".deps/ftw_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_10.lo -MD -MP -MF .deps/ftw_10.Tpo -c ftw_10.c -o ftw_10.o echo timestamp > ftw_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_16.lo -MD -MP -MF ".deps/ftw_16.Tpo" \ -c -o ftw_16.lo `test -f 'ftw_16.c' || echo './'`ftw_16.c; \ then mv ".deps/ftw_16.Tpo" ".deps/ftw_16.Plo"; \ else rm -f ".deps/ftw_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_16.lo -MD -MP -MF .deps/ftw_16.Tpo -c ftw_16.c -o ftw_16.o echo timestamp > ftw_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_32.lo -MD -MP -MF ".deps/ftw_32.Tpo" \ -c -o ftw_32.lo `test -f 'ftw_32.c' || echo './'`ftw_32.c; \ then mv ".deps/ftw_32.Tpo" ".deps/ftw_32.Plo"; \ else rm -f ".deps/ftw_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_32.lo -MD -MP -MF .deps/ftw_32.Tpo -c ftw_32.c -o ftw_32.o echo timestamp > ftw_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_64.lo -MD -MP -MF ".deps/ftw_64.Tpo" \ -c -o ftw_64.lo `test -f 'ftw_64.c' || echo './'`ftw_64.c; \ then mv ".deps/ftw_64.Tpo" ".deps/ftw_64.Plo"; \ else rm -f ".deps/ftw_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftw_64.lo -MD -MP -MF .deps/ftw_64.Tpo -c ftw_64.c -o ftw_64.o echo timestamp > ftw_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_1.lo -MD -MP -MF ".deps/fni_1.Tpo" \ -c -o fni_1.lo `test -f 'fni_1.c' || echo './'`fni_1.c; \ then mv ".deps/fni_1.Tpo" ".deps/fni_1.Plo"; \ else rm -f ".deps/fni_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_1.lo -MD -MP -MF .deps/fni_1.Tpo -c fni_1.c -o fni_1.o echo timestamp > fni_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_2.lo -MD -MP -MF ".deps/fni_2.Tpo" \ -c -o fni_2.lo `test -f 'fni_2.c' || echo './'`fni_2.c; \ then mv ".deps/fni_2.Tpo" ".deps/fni_2.Plo"; \ else rm -f ".deps/fni_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_2.lo -MD -MP -MF .deps/fni_2.Tpo -c fni_2.c -o fni_2.o echo timestamp > fni_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_3.lo -MD -MP -MF ".deps/fni_3.Tpo" \ -c -o fni_3.lo `test -f 'fni_3.c' || echo './'`fni_3.c; \ then mv ".deps/fni_3.Tpo" ".deps/fni_3.Plo"; \ else rm -f ".deps/fni_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_3.lo -MD -MP -MF .deps/fni_3.Tpo -c fni_3.c -o fni_3.o echo timestamp > fni_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_4.lo -MD -MP -MF ".deps/fni_4.Tpo" \ -c -o fni_4.lo `test -f 'fni_4.c' || echo './'`fni_4.c; \ then mv ".deps/fni_4.Tpo" ".deps/fni_4.Plo"; \ else rm -f ".deps/fni_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_4.lo -MD -MP -MF .deps/fni_4.Tpo -c fni_4.c -o fni_4.o echo timestamp > fni_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_5.lo -MD -MP -MF ".deps/fni_5.Tpo" \ -c -o fni_5.lo `test -f 'fni_5.c' || echo './'`fni_5.c; \ then mv ".deps/fni_5.Tpo" ".deps/fni_5.Plo"; \ else rm -f ".deps/fni_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_5.lo -MD -MP -MF .deps/fni_5.Tpo -c fni_5.c -o fni_5.o echo timestamp > fni_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_6.lo -MD -MP -MF ".deps/fni_6.Tpo" \ -c -o fni_6.lo `test -f 'fni_6.c' || echo './'`fni_6.c; \ then mv ".deps/fni_6.Tpo" ".deps/fni_6.Plo"; \ else rm -f ".deps/fni_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_6.lo -MD -MP -MF .deps/fni_6.Tpo -c fni_6.c -o fni_6.o echo timestamp > fni_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_7.lo -MD -MP -MF ".deps/fni_7.Tpo" \ -c -o fni_7.lo `test -f 'fni_7.c' || echo './'`fni_7.c; \ then mv ".deps/fni_7.Tpo" ".deps/fni_7.Plo"; \ else rm -f ".deps/fni_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_7.lo -MD -MP -MF .deps/fni_7.Tpo -c fni_7.c -o fni_7.o echo timestamp > fni_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_8.lo -MD -MP -MF ".deps/fni_8.Tpo" \ -c -o fni_8.lo `test -f 'fni_8.c' || echo './'`fni_8.c; \ then mv ".deps/fni_8.Tpo" ".deps/fni_8.Plo"; \ else rm -f ".deps/fni_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_8.lo -MD -MP -MF .deps/fni_8.Tpo -c fni_8.c -o fni_8.o echo timestamp > fni_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_9.lo -MD -MP -MF ".deps/fni_9.Tpo" \ -c -o fni_9.lo `test -f 'fni_9.c' || echo './'`fni_9.c; \ then mv ".deps/fni_9.Tpo" ".deps/fni_9.Plo"; \ else rm -f ".deps/fni_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_9.lo -MD -MP -MF .deps/fni_9.Tpo -c fni_9.c -o fni_9.o echo timestamp > fni_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_10.lo -MD -MP -MF ".deps/fni_10.Tpo" \ -c -o fni_10.lo `test -f 'fni_10.c' || echo './'`fni_10.c; \ then mv ".deps/fni_10.Tpo" ".deps/fni_10.Plo"; \ else rm -f ".deps/fni_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_10.lo -MD -MP -MF .deps/fni_10.Tpo -c fni_10.c -o fni_10.o echo timestamp > fni_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_11.lo -MD -MP -MF ".deps/fni_11.Tpo" \ -c -o fni_11.lo `test -f 'fni_11.c' || echo './'`fni_11.c; \ then mv ".deps/fni_11.Tpo" ".deps/fni_11.Plo"; \ else rm -f ".deps/fni_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_11.lo -MD -MP -MF .deps/fni_11.Tpo -c fni_11.c -o fni_11.o echo timestamp > fni_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_12.lo -MD -MP -MF ".deps/fni_12.Tpo" \ -c -o fni_12.lo `test -f 'fni_12.c' || echo './'`fni_12.c; \ then mv ".deps/fni_12.Tpo" ".deps/fni_12.Plo"; \ else rm -f ".deps/fni_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_12.lo -MD -MP -MF .deps/fni_12.Tpo -c fni_12.c -o fni_12.o echo timestamp > fni_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_13.lo -MD -MP -MF ".deps/fni_13.Tpo" \ -c -o fni_13.lo `test -f 'fni_13.c' || echo './'`fni_13.c; \ then mv ".deps/fni_13.Tpo" ".deps/fni_13.Plo"; \ else rm -f ".deps/fni_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_13.lo -MD -MP -MF .deps/fni_13.Tpo -c fni_13.c -o fni_13.o echo timestamp > fni_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_14.lo -MD -MP -MF ".deps/fni_14.Tpo" \ -c -o fni_14.lo `test -f 'fni_14.c' || echo './'`fni_14.c; \ then mv ".deps/fni_14.Tpo" ".deps/fni_14.Plo"; \ else rm -f ".deps/fni_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_14.lo -MD -MP -MF .deps/fni_14.Tpo -c fni_14.c -o fni_14.o echo timestamp > fni_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_15.lo -MD -MP -MF ".deps/fni_15.Tpo" \ -c -o fni_15.lo `test -f 'fni_15.c' || echo './'`fni_15.c; \ then mv ".deps/fni_15.Tpo" ".deps/fni_15.Plo"; \ else rm -f ".deps/fni_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_15.lo -MD -MP -MF .deps/fni_15.Tpo -c fni_15.c -o fni_15.o echo timestamp > fni_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_16.lo -MD -MP -MF ".deps/fni_16.Tpo" \ -c -o fni_16.lo `test -f 'fni_16.c' || echo './'`fni_16.c; \ then mv ".deps/fni_16.Tpo" ".deps/fni_16.Plo"; \ else rm -f ".deps/fni_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_16.lo -MD -MP -MF .deps/fni_16.Tpo -c fni_16.c -o fni_16.o echo timestamp > fni_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_32.lo -MD -MP -MF ".deps/fni_32.Tpo" \ -c -o fni_32.lo `test -f 'fni_32.c' || echo './'`fni_32.c; \ then mv ".deps/fni_32.Tpo" ".deps/fni_32.Plo"; \ else rm -f ".deps/fni_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_32.lo -MD -MP -MF .deps/fni_32.Tpo -c fni_32.c -o fni_32.o echo timestamp > fni_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_64.lo -MD -MP -MF ".deps/fni_64.Tpo" \ -c -o fni_64.lo `test -f 'fni_64.c' || echo './'`fni_64.c; \ then mv ".deps/fni_64.Tpo" ".deps/fni_64.Plo"; \ else rm -f ".deps/fni_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fni_64.lo -MD -MP -MF .deps/fni_64.Tpo -c fni_64.c -o fni_64.o echo timestamp > fni_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_2.lo -MD -MP -MF ".deps/ftwi_2.Tpo" \ -c -o ftwi_2.lo `test -f 'ftwi_2.c' || echo './'`ftwi_2.c; \ then mv ".deps/ftwi_2.Tpo" ".deps/ftwi_2.Plo"; \ else rm -f ".deps/ftwi_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_2.lo -MD -MP -MF .deps/ftwi_2.Tpo -c ftwi_2.c -o ftwi_2.o echo timestamp > ftwi_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_3.lo -MD -MP -MF ".deps/ftwi_3.Tpo" \ -c -o ftwi_3.lo `test -f 'ftwi_3.c' || echo './'`ftwi_3.c; \ then mv ".deps/ftwi_3.Tpo" ".deps/ftwi_3.Plo"; \ else rm -f ".deps/ftwi_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_3.lo -MD -MP -MF .deps/ftwi_3.Tpo -c ftwi_3.c -o ftwi_3.o echo timestamp > ftwi_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_4.lo -MD -MP -MF ".deps/ftwi_4.Tpo" \ -c -o ftwi_4.lo `test -f 'ftwi_4.c' || echo './'`ftwi_4.c; \ then mv ".deps/ftwi_4.Tpo" ".deps/ftwi_4.Plo"; \ else rm -f ".deps/ftwi_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_4.lo -MD -MP -MF .deps/ftwi_4.Tpo -c ftwi_4.c -o ftwi_4.o echo timestamp > ftwi_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_5.lo -MD -MP -MF ".deps/ftwi_5.Tpo" \ -c -o ftwi_5.lo `test -f 'ftwi_5.c' || echo './'`ftwi_5.c; \ then mv ".deps/ftwi_5.Tpo" ".deps/ftwi_5.Plo"; \ else rm -f ".deps/ftwi_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_5.lo -MD -MP -MF .deps/ftwi_5.Tpo -c ftwi_5.c -o ftwi_5.o echo timestamp > ftwi_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_6.lo -MD -MP -MF ".deps/ftwi_6.Tpo" \ -c -o ftwi_6.lo `test -f 'ftwi_6.c' || echo './'`ftwi_6.c; \ then mv ".deps/ftwi_6.Tpo" ".deps/ftwi_6.Plo"; \ else rm -f ".deps/ftwi_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_6.lo -MD -MP -MF .deps/ftwi_6.Tpo -c ftwi_6.c -o ftwi_6.o echo timestamp > ftwi_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_7.lo -MD -MP -MF ".deps/ftwi_7.Tpo" \ -c -o ftwi_7.lo `test -f 'ftwi_7.c' || echo './'`ftwi_7.c; \ then mv ".deps/ftwi_7.Tpo" ".deps/ftwi_7.Plo"; \ else rm -f ".deps/ftwi_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_7.lo -MD -MP -MF .deps/ftwi_7.Tpo -c ftwi_7.c -o ftwi_7.o echo timestamp > ftwi_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_8.lo -MD -MP -MF ".deps/ftwi_8.Tpo" \ -c -o ftwi_8.lo `test -f 'ftwi_8.c' || echo './'`ftwi_8.c; \ then mv ".deps/ftwi_8.Tpo" ".deps/ftwi_8.Plo"; \ else rm -f ".deps/ftwi_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_8.lo -MD -MP -MF .deps/ftwi_8.Tpo -c ftwi_8.c -o ftwi_8.o echo timestamp > ftwi_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_9.lo -MD -MP -MF ".deps/ftwi_9.Tpo" \ -c -o ftwi_9.lo `test -f 'ftwi_9.c' || echo './'`ftwi_9.c; \ then mv ".deps/ftwi_9.Tpo" ".deps/ftwi_9.Plo"; \ else rm -f ".deps/ftwi_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_9.lo -MD -MP -MF .deps/ftwi_9.Tpo -c ftwi_9.c -o ftwi_9.o echo timestamp > ftwi_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_10.lo -MD -MP -MF ".deps/ftwi_10.Tpo" \ -c -o ftwi_10.lo `test -f 'ftwi_10.c' || echo './'`ftwi_10.c; \ then mv ".deps/ftwi_10.Tpo" ".deps/ftwi_10.Plo"; \ else rm -f ".deps/ftwi_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_10.lo -MD -MP -MF .deps/ftwi_10.Tpo -c ftwi_10.c -o ftwi_10.o echo timestamp > ftwi_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_16.lo -MD -MP -MF ".deps/ftwi_16.Tpo" \ -c -o ftwi_16.lo `test -f 'ftwi_16.c' || echo './'`ftwi_16.c; \ then mv ".deps/ftwi_16.Tpo" ".deps/ftwi_16.Plo"; \ else rm -f ".deps/ftwi_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_16.lo -MD -MP -MF .deps/ftwi_16.Tpo -c ftwi_16.c -o ftwi_16.o echo timestamp > ftwi_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_32.lo -MD -MP -MF ".deps/ftwi_32.Tpo" \ -c -o ftwi_32.lo `test -f 'ftwi_32.c' || echo './'`ftwi_32.c; \ then mv ".deps/ftwi_32.Tpo" ".deps/ftwi_32.Plo"; \ else rm -f ".deps/ftwi_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_32.lo -MD -MP -MF .deps/ftwi_32.Tpo -c ftwi_32.c -o ftwi_32.o echo timestamp > ftwi_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_64.lo -MD -MP -MF ".deps/ftwi_64.Tpo" \ -c -o ftwi_64.lo `test -f 'ftwi_64.c' || echo './'`ftwi_64.c; \ then mv ".deps/ftwi_64.Tpo" ".deps/ftwi_64.Plo"; \ else rm -f ".deps/ftwi_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT ftwi_64.lo -MD -MP -MF .deps/ftwi_64.Tpo -c ftwi_64.c -o ftwi_64.o echo timestamp > ftwi_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT timer.lo -MD -MP -MF ".deps/timer.Tpo" \ -c -o timer.lo `test -f 'timer.c' || echo './'`timer.c; \ then mv ".deps/timer.Tpo" ".deps/timer.Plo"; \ else rm -f ".deps/timer.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c timer.c -o timer.o echo timestamp > timer.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT config.lo -MD -MP -MF ".deps/config.Tpo" \ -c -o config.lo `test -f 'config.c' || echo './'`config.c; \ then mv ".deps/config.Tpo" ".deps/config.Plo"; \ else rm -f ".deps/config.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT config.lo -MD -MP -MF .deps/config.Tpo -c config.c -o config.o echo timestamp > config.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT planner.lo -MD -MP -MF ".deps/planner.Tpo" \ -c -o planner.lo `test -f 'planner.c' || echo './'`planner.c; \ then mv ".deps/planner.Tpo" ".deps/planner.Plo"; \ else rm -f ".deps/planner.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT planner.lo -MD -MP -MF .deps/planner.Tpo -c planner.c -o planner.o echo timestamp > planner.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT twiddle.lo -MD -MP -MF ".deps/twiddle.Tpo" \ -c -o twiddle.lo `test -f 'twiddle.c' || echo './'`twiddle.c; \ then mv ".deps/twiddle.Tpo" ".deps/twiddle.Plo"; \ else rm -f ".deps/twiddle.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT twiddle.lo -MD -MP -MF .deps/twiddle.Tpo -c twiddle.c -o twiddle.o echo timestamp > twiddle.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT executor.lo -MD -MP -MF ".deps/executor.Tpo" \ -c -o executor.lo `test -f 'executor.c' || echo './'`executor.c; \ then mv ".deps/executor.Tpo" ".deps/executor.Plo"; \ else rm -f ".deps/executor.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT executor.lo -MD -MP -MF .deps/executor.Tpo -c executor.c -o executor.o echo timestamp > executor.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT generic.lo -MD -MP -MF ".deps/generic.Tpo" \ -c -o generic.lo `test -f 'generic.c' || echo './'`generic.c; \ then mv ".deps/generic.Tpo" ".deps/generic.Plo"; \ else rm -f ".deps/generic.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT generic.lo -MD -MP -MF .deps/generic.Tpo -c generic.c -o generic.o echo timestamp > generic.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fftwnd.lo -MD -MP -MF ".deps/fftwnd.Tpo" \ -c -o fftwnd.lo `test -f 'fftwnd.c' || echo './'`fftwnd.c; \ then mv ".deps/fftwnd.Tpo" ".deps/fftwnd.Plo"; \ else rm -f ".deps/fftwnd.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fftwnd.lo -MD -MP -MF .deps/fftwnd.Tpo -c fftwnd.c -o fftwnd.o echo timestamp > fftwnd.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT malloc.lo -MD -MP -MF ".deps/malloc.Tpo" \ -c -o malloc.lo `test -f 'malloc.c' || echo './'`malloc.c; \ then mv ".deps/malloc.Tpo" ".deps/malloc.Plo"; \ else rm -f ".deps/malloc.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c malloc.c -o malloc.o echo timestamp > malloc.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT wisdom.lo -MD -MP -MF ".deps/wisdom.Tpo" \ -c -o wisdom.lo `test -f 'wisdom.c' || echo './'`wisdom.c; \ then mv ".deps/wisdom.Tpo" ".deps/wisdom.Plo"; \ else rm -f ".deps/wisdom.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT wisdom.lo -MD -MP -MF .deps/wisdom.Tpo -c wisdom.c -o wisdom.o echo timestamp > wisdom.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT wisdomio.lo -MD -MP -MF ".deps/wisdomio.Tpo" \ -c -o wisdomio.lo `test -f 'wisdomio.c' || echo './'`wisdomio.c; \ then mv ".deps/wisdomio.Tpo" ".deps/wisdomio.Plo"; \ else rm -f ".deps/wisdomio.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT wisdomio.lo -MD -MP -MF .deps/wisdomio.Tpo -c wisdomio.c -o wisdomio.o echo timestamp > wisdomio.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT putils.lo -MD -MP -MF ".deps/putils.Tpo" \ -c -o putils.lo `test -f 'putils.c' || echo './'`putils.c; \ then mv ".deps/putils.Tpo" ".deps/putils.Plo"; \ else rm -f ".deps/putils.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT putils.lo -MD -MP -MF .deps/putils.Tpo -c putils.c -o putils.o echo timestamp > putils.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rader.lo -MD -MP -MF ".deps/rader.Tpo" \ -c -o rader.lo `test -f 'rader.c' || echo './'`rader.c; \ then mv ".deps/rader.Tpo" ".deps/rader.Plo"; \ else rm -f ".deps/rader.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rader.lo -MD -MP -MF .deps/rader.Tpo -c rader.c -o rader.o echo timestamp > rader.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fftwf77.lo -MD -MP -MF ".deps/fftwf77.Tpo" \ -c -o fftwf77.lo `test -f 'fftwf77.c' || echo './'`fftwf77.c; \ then mv ".deps/fftwf77.Tpo" ".deps/fftwf77.Plo"; \ else rm -f ".deps/fftwf77.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fftwf77.lo -MD -MP -MF .deps/fftwf77.Tpo -c fftwf77.c -o fftwf77.o echo timestamp > fftwf77.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o libdfftw.la -rpath /opt/amber11/lib -version-info 2:7:0 fn_1.lo fn_2.lo fn_3.lo fn_4.lo fn_5.lo fn_6.lo fn_7.lo fn_8.lo fn_9.lo fn_10.lo fn_11.lo fn_12.lo fn_13.lo fn_14.lo fn_15.lo fn_16.lo fn_32.lo fn_64.lo ftw_2.lo ftw_3.lo ftw_4.lo ftw_5.lo ftw_6.lo ftw_7.lo ftw_8.lo ftw_9.lo ftw_10.lo ftw_16.lo ftw_32.lo ftw_64.lo fni_1.lo fni_2.lo fni_3.lo fni_4.lo fni_5.lo fni_6.lo fni_7.lo fni_8.lo fni_9.lo fni_10.lo fni_11.lo fni_12.lo fni_13.lo fni_14.lo fni_15.lo fni_16.lo fni_32.lo fni_64.lo ftwi_2.lo ftwi_3.lo ftwi_4.lo ftwi_5.lo ftwi_6.lo ftwi_7.lo ftwi_8.lo ftwi_9.lo ftwi_10.lo ftwi_16.lo ftwi_32.lo ftwi_64.lo timer.lo config.lo planner.lo twiddle.lo executor.lo generic.lo fftwnd.lo malloc.lo wisdom.lo wisdomio.lo putils.lo rader.lo fftwf77.lo -lm mkdir .libs rm -fr .libs/libdfftw.la .libs/libdfftw.* .libs/libdfftw.* ar cru .libs/libdfftw.a fn_1.o fn_2.o fn_3.o fn_4.o fn_5.o fn_6.o fn_7.o fn_8.o fn_9.o fn_10.o fn_11.o fn_12.o fn_13.o fn_14.o fn_15.o fn_16.o fn_32.o fn_64.o ftw_2.o ftw_3.o ftw_4.o ftw_5.o ftw_6.o ftw_7.o ftw_8.o ftw_9.o ftw_10.o ftw_16.o ftw_32.o ftw_64.o fni_1.o fni_2.o fni_3.o fni_4.o fni_5.o fni_6.o fni_7.o fni_8.o fni_9.o fni_10.o fni_11.o fni_12.o fni_13.o fni_14.o fni_15.o fni_16.o fni_32.o fni_64.o ftwi_2.o ftwi_3.o ftwi_4.o ftwi_5.o ftwi_6.o ftwi_7.o ftwi_8.o ftwi_9.o ftwi_10.o ftwi_16.o ftwi_32.o ftwi_64.o timer.o config.o planner.o twiddle.o executor.o generic.o fftwnd.o malloc.o wisdom.o wisdomio.o putils.o rader.o fftwf77.o ranlib .libs/libdfftw.a creating libdfftw.la (cd .libs && rm -f libdfftw.la && ln -s ../libdfftw.la libdfftw.la) rm -f dfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./fftw.h > dfftw.h make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/fftw' /bin/sh ../mkinstalldirs /opt/amber11/lib /bin/sh ../libtool --mode=install /usr/bin/install -c libdfftw.la /opt/amber11/lib/libdfftw.la /usr/bin/install -c .libs/libdfftw.lai /opt/amber11/lib/libdfftw.la /usr/bin/install -c .libs/libdfftw.a /opt/amber11/lib/libdfftw.a ranlib /opt/amber11/lib/libdfftw.a chmod 644 /opt/amber11/lib/libdfftw.a PATH="$PATH:/sbin" ldconfig -n /opt/amber11/lib ---------------------------------------------------------------------- Libraries have been installed in: /opt/amber11/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /opt/amber11/include /usr/bin/install -c -m 644 dfftw.h /opt/amber11/include/dfftw.h make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/fftw' Making install in rfftw make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/rfftw' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_1.lo -MD -MP -MF ".deps/frc_1.Tpo" \ -c -o frc_1.lo `test -f 'frc_1.c' || echo './'`frc_1.c; \ then mv ".deps/frc_1.Tpo" ".deps/frc_1.Plo"; \ else rm -f ".deps/frc_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_1.lo -MD -MP -MF .deps/frc_1.Tpo -c frc_1.c -o frc_1.o echo timestamp > frc_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_2.lo -MD -MP -MF ".deps/frc_2.Tpo" \ -c -o frc_2.lo `test -f 'frc_2.c' || echo './'`frc_2.c; \ then mv ".deps/frc_2.Tpo" ".deps/frc_2.Plo"; \ else rm -f ".deps/frc_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_2.lo -MD -MP -MF .deps/frc_2.Tpo -c frc_2.c -o frc_2.o echo timestamp > frc_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_3.lo -MD -MP -MF ".deps/frc_3.Tpo" \ -c -o frc_3.lo `test -f 'frc_3.c' || echo './'`frc_3.c; \ then mv ".deps/frc_3.Tpo" ".deps/frc_3.Plo"; \ else rm -f ".deps/frc_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_3.lo -MD -MP -MF .deps/frc_3.Tpo -c frc_3.c -o frc_3.o echo timestamp > frc_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_4.lo -MD -MP -MF ".deps/frc_4.Tpo" \ -c -o frc_4.lo `test -f 'frc_4.c' || echo './'`frc_4.c; \ then mv ".deps/frc_4.Tpo" ".deps/frc_4.Plo"; \ else rm -f ".deps/frc_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_4.lo -MD -MP -MF .deps/frc_4.Tpo -c frc_4.c -o frc_4.o echo timestamp > frc_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_5.lo -MD -MP -MF ".deps/frc_5.Tpo" \ -c -o frc_5.lo `test -f 'frc_5.c' || echo './'`frc_5.c; \ then mv ".deps/frc_5.Tpo" ".deps/frc_5.Plo"; \ else rm -f ".deps/frc_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_5.lo -MD -MP -MF .deps/frc_5.Tpo -c frc_5.c -o frc_5.o echo timestamp > frc_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_6.lo -MD -MP -MF ".deps/frc_6.Tpo" \ -c -o frc_6.lo `test -f 'frc_6.c' || echo './'`frc_6.c; \ then mv ".deps/frc_6.Tpo" ".deps/frc_6.Plo"; \ else rm -f ".deps/frc_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_6.lo -MD -MP -MF .deps/frc_6.Tpo -c frc_6.c -o frc_6.o echo timestamp > frc_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_7.lo -MD -MP -MF ".deps/frc_7.Tpo" \ -c -o frc_7.lo `test -f 'frc_7.c' || echo './'`frc_7.c; \ then mv ".deps/frc_7.Tpo" ".deps/frc_7.Plo"; \ else rm -f ".deps/frc_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_7.lo -MD -MP -MF .deps/frc_7.Tpo -c frc_7.c -o frc_7.o echo timestamp > frc_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_8.lo -MD -MP -MF ".deps/frc_8.Tpo" \ -c -o frc_8.lo `test -f 'frc_8.c' || echo './'`frc_8.c; \ then mv ".deps/frc_8.Tpo" ".deps/frc_8.Plo"; \ else rm -f ".deps/frc_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_8.lo -MD -MP -MF .deps/frc_8.Tpo -c frc_8.c -o frc_8.o echo timestamp > frc_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_9.lo -MD -MP -MF ".deps/frc_9.Tpo" \ -c -o frc_9.lo `test -f 'frc_9.c' || echo './'`frc_9.c; \ then mv ".deps/frc_9.Tpo" ".deps/frc_9.Plo"; \ else rm -f ".deps/frc_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_9.lo -MD -MP -MF .deps/frc_9.Tpo -c frc_9.c -o frc_9.o echo timestamp > frc_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_10.lo -MD -MP -MF ".deps/frc_10.Tpo" \ -c -o frc_10.lo `test -f 'frc_10.c' || echo './'`frc_10.c; \ then mv ".deps/frc_10.Tpo" ".deps/frc_10.Plo"; \ else rm -f ".deps/frc_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_10.lo -MD -MP -MF .deps/frc_10.Tpo -c frc_10.c -o frc_10.o echo timestamp > frc_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_11.lo -MD -MP -MF ".deps/frc_11.Tpo" \ -c -o frc_11.lo `test -f 'frc_11.c' || echo './'`frc_11.c; \ then mv ".deps/frc_11.Tpo" ".deps/frc_11.Plo"; \ else rm -f ".deps/frc_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_11.lo -MD -MP -MF .deps/frc_11.Tpo -c frc_11.c -o frc_11.o echo timestamp > frc_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_12.lo -MD -MP -MF ".deps/frc_12.Tpo" \ -c -o frc_12.lo `test -f 'frc_12.c' || echo './'`frc_12.c; \ then mv ".deps/frc_12.Tpo" ".deps/frc_12.Plo"; \ else rm -f ".deps/frc_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_12.lo -MD -MP -MF .deps/frc_12.Tpo -c frc_12.c -o frc_12.o echo timestamp > frc_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_13.lo -MD -MP -MF ".deps/frc_13.Tpo" \ -c -o frc_13.lo `test -f 'frc_13.c' || echo './'`frc_13.c; \ then mv ".deps/frc_13.Tpo" ".deps/frc_13.Plo"; \ else rm -f ".deps/frc_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_13.lo -MD -MP -MF .deps/frc_13.Tpo -c frc_13.c -o frc_13.o echo timestamp > frc_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_14.lo -MD -MP -MF ".deps/frc_14.Tpo" \ -c -o frc_14.lo `test -f 'frc_14.c' || echo './'`frc_14.c; \ then mv ".deps/frc_14.Tpo" ".deps/frc_14.Plo"; \ else rm -f ".deps/frc_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_14.lo -MD -MP -MF .deps/frc_14.Tpo -c frc_14.c -o frc_14.o echo timestamp > frc_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_15.lo -MD -MP -MF ".deps/frc_15.Tpo" \ -c -o frc_15.lo `test -f 'frc_15.c' || echo './'`frc_15.c; \ then mv ".deps/frc_15.Tpo" ".deps/frc_15.Plo"; \ else rm -f ".deps/frc_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_15.lo -MD -MP -MF .deps/frc_15.Tpo -c frc_15.c -o frc_15.o echo timestamp > frc_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_16.lo -MD -MP -MF ".deps/frc_16.Tpo" \ -c -o frc_16.lo `test -f 'frc_16.c' || echo './'`frc_16.c; \ then mv ".deps/frc_16.Tpo" ".deps/frc_16.Plo"; \ else rm -f ".deps/frc_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_16.lo -MD -MP -MF .deps/frc_16.Tpo -c frc_16.c -o frc_16.o echo timestamp > frc_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_32.lo -MD -MP -MF ".deps/frc_32.Tpo" \ -c -o frc_32.lo `test -f 'frc_32.c' || echo './'`frc_32.c; \ then mv ".deps/frc_32.Tpo" ".deps/frc_32.Plo"; \ else rm -f ".deps/frc_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_32.lo -MD -MP -MF .deps/frc_32.Tpo -c frc_32.c -o frc_32.o echo timestamp > frc_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_64.lo -MD -MP -MF ".deps/frc_64.Tpo" \ -c -o frc_64.lo `test -f 'frc_64.c' || echo './'`frc_64.c; \ then mv ".deps/frc_64.Tpo" ".deps/frc_64.Plo"; \ else rm -f ".deps/frc_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_64.lo -MD -MP -MF .deps/frc_64.Tpo -c frc_64.c -o frc_64.o echo timestamp > frc_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_128.lo -MD -MP -MF ".deps/frc_128.Tpo" \ -c -o frc_128.lo `test -f 'frc_128.c' || echo './'`frc_128.c; \ then mv ".deps/frc_128.Tpo" ".deps/frc_128.Plo"; \ else rm -f ".deps/frc_128.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT frc_128.lo -MD -MP -MF .deps/frc_128.Tpo -c frc_128.c -o frc_128.o echo timestamp > frc_128.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_2.lo -MD -MP -MF ".deps/fhf_2.Tpo" \ -c -o fhf_2.lo `test -f 'fhf_2.c' || echo './'`fhf_2.c; \ then mv ".deps/fhf_2.Tpo" ".deps/fhf_2.Plo"; \ else rm -f ".deps/fhf_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_2.lo -MD -MP -MF .deps/fhf_2.Tpo -c fhf_2.c -o fhf_2.o echo timestamp > fhf_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_3.lo -MD -MP -MF ".deps/fhf_3.Tpo" \ -c -o fhf_3.lo `test -f 'fhf_3.c' || echo './'`fhf_3.c; \ then mv ".deps/fhf_3.Tpo" ".deps/fhf_3.Plo"; \ else rm -f ".deps/fhf_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_3.lo -MD -MP -MF .deps/fhf_3.Tpo -c fhf_3.c -o fhf_3.o echo timestamp > fhf_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_4.lo -MD -MP -MF ".deps/fhf_4.Tpo" \ -c -o fhf_4.lo `test -f 'fhf_4.c' || echo './'`fhf_4.c; \ then mv ".deps/fhf_4.Tpo" ".deps/fhf_4.Plo"; \ else rm -f ".deps/fhf_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_4.lo -MD -MP -MF .deps/fhf_4.Tpo -c fhf_4.c -o fhf_4.o echo timestamp > fhf_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_5.lo -MD -MP -MF ".deps/fhf_5.Tpo" \ -c -o fhf_5.lo `test -f 'fhf_5.c' || echo './'`fhf_5.c; \ then mv ".deps/fhf_5.Tpo" ".deps/fhf_5.Plo"; \ else rm -f ".deps/fhf_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_5.lo -MD -MP -MF .deps/fhf_5.Tpo -c fhf_5.c -o fhf_5.o echo timestamp > fhf_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_6.lo -MD -MP -MF ".deps/fhf_6.Tpo" \ -c -o fhf_6.lo `test -f 'fhf_6.c' || echo './'`fhf_6.c; \ then mv ".deps/fhf_6.Tpo" ".deps/fhf_6.Plo"; \ else rm -f ".deps/fhf_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_6.lo -MD -MP -MF .deps/fhf_6.Tpo -c fhf_6.c -o fhf_6.o echo timestamp > fhf_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_7.lo -MD -MP -MF ".deps/fhf_7.Tpo" \ -c -o fhf_7.lo `test -f 'fhf_7.c' || echo './'`fhf_7.c; \ then mv ".deps/fhf_7.Tpo" ".deps/fhf_7.Plo"; \ else rm -f ".deps/fhf_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_7.lo -MD -MP -MF .deps/fhf_7.Tpo -c fhf_7.c -o fhf_7.o echo timestamp > fhf_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_8.lo -MD -MP -MF ".deps/fhf_8.Tpo" \ -c -o fhf_8.lo `test -f 'fhf_8.c' || echo './'`fhf_8.c; \ then mv ".deps/fhf_8.Tpo" ".deps/fhf_8.Plo"; \ else rm -f ".deps/fhf_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_8.lo -MD -MP -MF .deps/fhf_8.Tpo -c fhf_8.c -o fhf_8.o echo timestamp > fhf_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_9.lo -MD -MP -MF ".deps/fhf_9.Tpo" \ -c -o fhf_9.lo `test -f 'fhf_9.c' || echo './'`fhf_9.c; \ then mv ".deps/fhf_9.Tpo" ".deps/fhf_9.Plo"; \ else rm -f ".deps/fhf_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_9.lo -MD -MP -MF .deps/fhf_9.Tpo -c fhf_9.c -o fhf_9.o echo timestamp > fhf_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_10.lo -MD -MP -MF ".deps/fhf_10.Tpo" \ -c -o fhf_10.lo `test -f 'fhf_10.c' || echo './'`fhf_10.c; \ then mv ".deps/fhf_10.Tpo" ".deps/fhf_10.Plo"; \ else rm -f ".deps/fhf_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_10.lo -MD -MP -MF .deps/fhf_10.Tpo -c fhf_10.c -o fhf_10.o echo timestamp > fhf_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_16.lo -MD -MP -MF ".deps/fhf_16.Tpo" \ -c -o fhf_16.lo `test -f 'fhf_16.c' || echo './'`fhf_16.c; \ then mv ".deps/fhf_16.Tpo" ".deps/fhf_16.Plo"; \ else rm -f ".deps/fhf_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_16.lo -MD -MP -MF .deps/fhf_16.Tpo -c fhf_16.c -o fhf_16.o echo timestamp > fhf_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_32.lo -MD -MP -MF ".deps/fhf_32.Tpo" \ -c -o fhf_32.lo `test -f 'fhf_32.c' || echo './'`fhf_32.c; \ then mv ".deps/fhf_32.Tpo" ".deps/fhf_32.Plo"; \ else rm -f ".deps/fhf_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhf_32.lo -MD -MP -MF .deps/fhf_32.Tpo -c fhf_32.c -o fhf_32.o echo timestamp > fhf_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_1.lo -MD -MP -MF ".deps/fcr_1.Tpo" \ -c -o fcr_1.lo `test -f 'fcr_1.c' || echo './'`fcr_1.c; \ then mv ".deps/fcr_1.Tpo" ".deps/fcr_1.Plo"; \ else rm -f ".deps/fcr_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_1.lo -MD -MP -MF .deps/fcr_1.Tpo -c fcr_1.c -o fcr_1.o echo timestamp > fcr_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_2.lo -MD -MP -MF ".deps/fcr_2.Tpo" \ -c -o fcr_2.lo `test -f 'fcr_2.c' || echo './'`fcr_2.c; \ then mv ".deps/fcr_2.Tpo" ".deps/fcr_2.Plo"; \ else rm -f ".deps/fcr_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_2.lo -MD -MP -MF .deps/fcr_2.Tpo -c fcr_2.c -o fcr_2.o echo timestamp > fcr_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_3.lo -MD -MP -MF ".deps/fcr_3.Tpo" \ -c -o fcr_3.lo `test -f 'fcr_3.c' || echo './'`fcr_3.c; \ then mv ".deps/fcr_3.Tpo" ".deps/fcr_3.Plo"; \ else rm -f ".deps/fcr_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_3.lo -MD -MP -MF .deps/fcr_3.Tpo -c fcr_3.c -o fcr_3.o echo timestamp > fcr_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_4.lo -MD -MP -MF ".deps/fcr_4.Tpo" \ -c -o fcr_4.lo `test -f 'fcr_4.c' || echo './'`fcr_4.c; \ then mv ".deps/fcr_4.Tpo" ".deps/fcr_4.Plo"; \ else rm -f ".deps/fcr_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_4.lo -MD -MP -MF .deps/fcr_4.Tpo -c fcr_4.c -o fcr_4.o echo timestamp > fcr_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_5.lo -MD -MP -MF ".deps/fcr_5.Tpo" \ -c -o fcr_5.lo `test -f 'fcr_5.c' || echo './'`fcr_5.c; \ then mv ".deps/fcr_5.Tpo" ".deps/fcr_5.Plo"; \ else rm -f ".deps/fcr_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_5.lo -MD -MP -MF .deps/fcr_5.Tpo -c fcr_5.c -o fcr_5.o echo timestamp > fcr_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_6.lo -MD -MP -MF ".deps/fcr_6.Tpo" \ -c -o fcr_6.lo `test -f 'fcr_6.c' || echo './'`fcr_6.c; \ then mv ".deps/fcr_6.Tpo" ".deps/fcr_6.Plo"; \ else rm -f ".deps/fcr_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_6.lo -MD -MP -MF .deps/fcr_6.Tpo -c fcr_6.c -o fcr_6.o echo timestamp > fcr_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_7.lo -MD -MP -MF ".deps/fcr_7.Tpo" \ -c -o fcr_7.lo `test -f 'fcr_7.c' || echo './'`fcr_7.c; \ then mv ".deps/fcr_7.Tpo" ".deps/fcr_7.Plo"; \ else rm -f ".deps/fcr_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_7.lo -MD -MP -MF .deps/fcr_7.Tpo -c fcr_7.c -o fcr_7.o echo timestamp > fcr_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_8.lo -MD -MP -MF ".deps/fcr_8.Tpo" \ -c -o fcr_8.lo `test -f 'fcr_8.c' || echo './'`fcr_8.c; \ then mv ".deps/fcr_8.Tpo" ".deps/fcr_8.Plo"; \ else rm -f ".deps/fcr_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_8.lo -MD -MP -MF .deps/fcr_8.Tpo -c fcr_8.c -o fcr_8.o echo timestamp > fcr_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_9.lo -MD -MP -MF ".deps/fcr_9.Tpo" \ -c -o fcr_9.lo `test -f 'fcr_9.c' || echo './'`fcr_9.c; \ then mv ".deps/fcr_9.Tpo" ".deps/fcr_9.Plo"; \ else rm -f ".deps/fcr_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_9.lo -MD -MP -MF .deps/fcr_9.Tpo -c fcr_9.c -o fcr_9.o echo timestamp > fcr_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_10.lo -MD -MP -MF ".deps/fcr_10.Tpo" \ -c -o fcr_10.lo `test -f 'fcr_10.c' || echo './'`fcr_10.c; \ then mv ".deps/fcr_10.Tpo" ".deps/fcr_10.Plo"; \ else rm -f ".deps/fcr_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_10.lo -MD -MP -MF .deps/fcr_10.Tpo -c fcr_10.c -o fcr_10.o echo timestamp > fcr_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_11.lo -MD -MP -MF ".deps/fcr_11.Tpo" \ -c -o fcr_11.lo `test -f 'fcr_11.c' || echo './'`fcr_11.c; \ then mv ".deps/fcr_11.Tpo" ".deps/fcr_11.Plo"; \ else rm -f ".deps/fcr_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_11.lo -MD -MP -MF .deps/fcr_11.Tpo -c fcr_11.c -o fcr_11.o echo timestamp > fcr_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_12.lo -MD -MP -MF ".deps/fcr_12.Tpo" \ -c -o fcr_12.lo `test -f 'fcr_12.c' || echo './'`fcr_12.c; \ then mv ".deps/fcr_12.Tpo" ".deps/fcr_12.Plo"; \ else rm -f ".deps/fcr_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_12.lo -MD -MP -MF .deps/fcr_12.Tpo -c fcr_12.c -o fcr_12.o echo timestamp > fcr_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_13.lo -MD -MP -MF ".deps/fcr_13.Tpo" \ -c -o fcr_13.lo `test -f 'fcr_13.c' || echo './'`fcr_13.c; \ then mv ".deps/fcr_13.Tpo" ".deps/fcr_13.Plo"; \ else rm -f ".deps/fcr_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_13.lo -MD -MP -MF .deps/fcr_13.Tpo -c fcr_13.c -o fcr_13.o echo timestamp > fcr_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_14.lo -MD -MP -MF ".deps/fcr_14.Tpo" \ -c -o fcr_14.lo `test -f 'fcr_14.c' || echo './'`fcr_14.c; \ then mv ".deps/fcr_14.Tpo" ".deps/fcr_14.Plo"; \ else rm -f ".deps/fcr_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_14.lo -MD -MP -MF .deps/fcr_14.Tpo -c fcr_14.c -o fcr_14.o echo timestamp > fcr_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_15.lo -MD -MP -MF ".deps/fcr_15.Tpo" \ -c -o fcr_15.lo `test -f 'fcr_15.c' || echo './'`fcr_15.c; \ then mv ".deps/fcr_15.Tpo" ".deps/fcr_15.Plo"; \ else rm -f ".deps/fcr_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_15.lo -MD -MP -MF .deps/fcr_15.Tpo -c fcr_15.c -o fcr_15.o echo timestamp > fcr_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_16.lo -MD -MP -MF ".deps/fcr_16.Tpo" \ -c -o fcr_16.lo `test -f 'fcr_16.c' || echo './'`fcr_16.c; \ then mv ".deps/fcr_16.Tpo" ".deps/fcr_16.Plo"; \ else rm -f ".deps/fcr_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_16.lo -MD -MP -MF .deps/fcr_16.Tpo -c fcr_16.c -o fcr_16.o echo timestamp > fcr_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_32.lo -MD -MP -MF ".deps/fcr_32.Tpo" \ -c -o fcr_32.lo `test -f 'fcr_32.c' || echo './'`fcr_32.c; \ then mv ".deps/fcr_32.Tpo" ".deps/fcr_32.Plo"; \ else rm -f ".deps/fcr_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_32.lo -MD -MP -MF .deps/fcr_32.Tpo -c fcr_32.c -o fcr_32.o echo timestamp > fcr_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_64.lo -MD -MP -MF ".deps/fcr_64.Tpo" \ -c -o fcr_64.lo `test -f 'fcr_64.c' || echo './'`fcr_64.c; \ then mv ".deps/fcr_64.Tpo" ".deps/fcr_64.Plo"; \ else rm -f ".deps/fcr_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_64.lo -MD -MP -MF .deps/fcr_64.Tpo -c fcr_64.c -o fcr_64.o echo timestamp > fcr_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_128.lo -MD -MP -MF ".deps/fcr_128.Tpo" \ -c -o fcr_128.lo `test -f 'fcr_128.c' || echo './'`fcr_128.c; \ then mv ".deps/fcr_128.Tpo" ".deps/fcr_128.Plo"; \ else rm -f ".deps/fcr_128.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fcr_128.lo -MD -MP -MF .deps/fcr_128.Tpo -c fcr_128.c -o fcr_128.o echo timestamp > fcr_128.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_2.lo -MD -MP -MF ".deps/fhb_2.Tpo" \ -c -o fhb_2.lo `test -f 'fhb_2.c' || echo './'`fhb_2.c; \ then mv ".deps/fhb_2.Tpo" ".deps/fhb_2.Plo"; \ else rm -f ".deps/fhb_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_2.lo -MD -MP -MF .deps/fhb_2.Tpo -c fhb_2.c -o fhb_2.o echo timestamp > fhb_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_3.lo -MD -MP -MF ".deps/fhb_3.Tpo" \ -c -o fhb_3.lo `test -f 'fhb_3.c' || echo './'`fhb_3.c; \ then mv ".deps/fhb_3.Tpo" ".deps/fhb_3.Plo"; \ else rm -f ".deps/fhb_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_3.lo -MD -MP -MF .deps/fhb_3.Tpo -c fhb_3.c -o fhb_3.o echo timestamp > fhb_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_4.lo -MD -MP -MF ".deps/fhb_4.Tpo" \ -c -o fhb_4.lo `test -f 'fhb_4.c' || echo './'`fhb_4.c; \ then mv ".deps/fhb_4.Tpo" ".deps/fhb_4.Plo"; \ else rm -f ".deps/fhb_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_4.lo -MD -MP -MF .deps/fhb_4.Tpo -c fhb_4.c -o fhb_4.o echo timestamp > fhb_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_5.lo -MD -MP -MF ".deps/fhb_5.Tpo" \ -c -o fhb_5.lo `test -f 'fhb_5.c' || echo './'`fhb_5.c; \ then mv ".deps/fhb_5.Tpo" ".deps/fhb_5.Plo"; \ else rm -f ".deps/fhb_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_5.lo -MD -MP -MF .deps/fhb_5.Tpo -c fhb_5.c -o fhb_5.o echo timestamp > fhb_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_6.lo -MD -MP -MF ".deps/fhb_6.Tpo" \ -c -o fhb_6.lo `test -f 'fhb_6.c' || echo './'`fhb_6.c; \ then mv ".deps/fhb_6.Tpo" ".deps/fhb_6.Plo"; \ else rm -f ".deps/fhb_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_6.lo -MD -MP -MF .deps/fhb_6.Tpo -c fhb_6.c -o fhb_6.o echo timestamp > fhb_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_7.lo -MD -MP -MF ".deps/fhb_7.Tpo" \ -c -o fhb_7.lo `test -f 'fhb_7.c' || echo './'`fhb_7.c; \ then mv ".deps/fhb_7.Tpo" ".deps/fhb_7.Plo"; \ else rm -f ".deps/fhb_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_7.lo -MD -MP -MF .deps/fhb_7.Tpo -c fhb_7.c -o fhb_7.o echo timestamp > fhb_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_8.lo -MD -MP -MF ".deps/fhb_8.Tpo" \ -c -o fhb_8.lo `test -f 'fhb_8.c' || echo './'`fhb_8.c; \ then mv ".deps/fhb_8.Tpo" ".deps/fhb_8.Plo"; \ else rm -f ".deps/fhb_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_8.lo -MD -MP -MF .deps/fhb_8.Tpo -c fhb_8.c -o fhb_8.o echo timestamp > fhb_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_9.lo -MD -MP -MF ".deps/fhb_9.Tpo" \ -c -o fhb_9.lo `test -f 'fhb_9.c' || echo './'`fhb_9.c; \ then mv ".deps/fhb_9.Tpo" ".deps/fhb_9.Plo"; \ else rm -f ".deps/fhb_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_9.lo -MD -MP -MF .deps/fhb_9.Tpo -c fhb_9.c -o fhb_9.o echo timestamp > fhb_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_10.lo -MD -MP -MF ".deps/fhb_10.Tpo" \ -c -o fhb_10.lo `test -f 'fhb_10.c' || echo './'`fhb_10.c; \ then mv ".deps/fhb_10.Tpo" ".deps/fhb_10.Plo"; \ else rm -f ".deps/fhb_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_10.lo -MD -MP -MF .deps/fhb_10.Tpo -c fhb_10.c -o fhb_10.o echo timestamp > fhb_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_16.lo -MD -MP -MF ".deps/fhb_16.Tpo" \ -c -o fhb_16.lo `test -f 'fhb_16.c' || echo './'`fhb_16.c; \ then mv ".deps/fhb_16.Tpo" ".deps/fhb_16.Plo"; \ else rm -f ".deps/fhb_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_16.lo -MD -MP -MF .deps/fhb_16.Tpo -c fhb_16.c -o fhb_16.o echo timestamp > fhb_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_32.lo -MD -MP -MF ".deps/fhb_32.Tpo" \ -c -o fhb_32.lo `test -f 'fhb_32.c' || echo './'`fhb_32.c; \ then mv ".deps/fhb_32.Tpo" ".deps/fhb_32.Plo"; \ else rm -f ".deps/fhb_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fhb_32.lo -MD -MP -MF .deps/fhb_32.Tpo -c fhb_32.c -o fhb_32.o echo timestamp > fhb_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rconfig.lo -MD -MP -MF ".deps/rconfig.Tpo" \ -c -o rconfig.lo `test -f 'rconfig.c' || echo './'`rconfig.c; \ then mv ".deps/rconfig.Tpo" ".deps/rconfig.Plo"; \ else rm -f ".deps/rconfig.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rconfig.lo -MD -MP -MF .deps/rconfig.Tpo -c rconfig.c -o rconfig.o echo timestamp > rconfig.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rplanner.lo -MD -MP -MF ".deps/rplanner.Tpo" \ -c -o rplanner.lo `test -f 'rplanner.c' || echo './'`rplanner.c; \ then mv ".deps/rplanner.Tpo" ".deps/rplanner.Plo"; \ else rm -f ".deps/rplanner.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rplanner.lo -MD -MP -MF .deps/rplanner.Tpo -c rplanner.c -o rplanner.o echo timestamp > rplanner.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rexec.lo -MD -MP -MF ".deps/rexec.Tpo" \ -c -o rexec.lo `test -f 'rexec.c' || echo './'`rexec.c; \ then mv ".deps/rexec.Tpo" ".deps/rexec.Plo"; \ else rm -f ".deps/rexec.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rexec.lo -MD -MP -MF .deps/rexec.Tpo -c rexec.c -o rexec.o echo timestamp > rexec.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rexec2.lo -MD -MP -MF ".deps/rexec2.Tpo" \ -c -o rexec2.lo `test -f 'rexec2.c' || echo './'`rexec2.c; \ then mv ".deps/rexec2.Tpo" ".deps/rexec2.Plo"; \ else rm -f ".deps/rexec2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rexec2.lo -MD -MP -MF .deps/rexec2.Tpo -c rexec2.c -o rexec2.o echo timestamp > rexec2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rfftwnd.lo -MD -MP -MF ".deps/rfftwnd.Tpo" \ -c -o rfftwnd.lo `test -f 'rfftwnd.c' || echo './'`rfftwnd.c; \ then mv ".deps/rfftwnd.Tpo" ".deps/rfftwnd.Plo"; \ else rm -f ".deps/rfftwnd.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rfftwnd.lo -MD -MP -MF .deps/rfftwnd.Tpo -c rfftwnd.c -o rfftwnd.o echo timestamp > rfftwnd.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rgeneric.lo -MD -MP -MF ".deps/rgeneric.Tpo" \ -c -o rgeneric.lo `test -f 'rgeneric.c' || echo './'`rgeneric.c; \ then mv ".deps/rgeneric.Tpo" ".deps/rgeneric.Plo"; \ else rm -f ".deps/rgeneric.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rgeneric.lo -MD -MP -MF .deps/rgeneric.Tpo -c rgeneric.c -o rgeneric.o echo timestamp > rgeneric.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rfftwf77.lo -MD -MP -MF ".deps/rfftwf77.Tpo" \ -c -o rfftwf77.lo `test -f 'rfftwf77.c' || echo './'`rfftwf77.c; \ then mv ".deps/rfftwf77.Tpo" ".deps/rfftwf77.Plo"; \ else rm -f ".deps/rfftwf77.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rfftwf77.lo -MD -MP -MF .deps/rfftwf77.Tpo -c rfftwf77.c -o rfftwf77.o echo timestamp > rfftwf77.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o libdrfftw.la -rpath /opt/amber11/lib -version-info 2:7:0 frc_1.lo frc_2.lo frc_3.lo frc_4.lo frc_5.lo frc_6.lo frc_7.lo frc_8.lo frc_9.lo frc_10.lo frc_11.lo frc_12.lo frc_13.lo frc_14.lo frc_15.lo frc_16.lo frc_32.lo frc_64.lo frc_128.lo fhf_2.lo fhf_3.lo fhf_4.lo fhf_5.lo fhf_6.lo fhf_7.lo fhf_8.lo fhf_9.lo fhf_10.lo fhf_16.lo fhf_32.lo fcr_1.lo fcr_2.lo fcr_3.lo fcr_4.lo fcr_5.lo fcr_6.lo fcr_7.lo fcr_8.lo fcr_9.lo fcr_10.lo fcr_11.lo fcr_12.lo fcr_13.lo fcr_14.lo fcr_15.lo fcr_16.lo fcr_32.lo fcr_64.lo fcr_128.lo fhb_2.lo fhb_3.lo fhb_4.lo fhb_5.lo fhb_6.lo fhb_7.lo fhb_8.lo fhb_9.lo fhb_10.lo fhb_16.lo fhb_32.lo rconfig.lo rplanner.lo rexec.lo rexec2.lo rfftwnd.lo rgeneric.lo rfftwf77.lo -lm mkdir .libs rm -fr .libs/libdrfftw.la .libs/libdrfftw.* .libs/libdrfftw.* ar cru .libs/libdrfftw.a frc_1.o frc_2.o frc_3.o frc_4.o frc_5.o frc_6.o frc_7.o frc_8.o frc_9.o frc_10.o frc_11.o frc_12.o frc_13.o frc_14.o frc_15.o frc_16.o frc_32.o frc_64.o frc_128.o fhf_2.o fhf_3.o fhf_4.o fhf_5.o fhf_6.o fhf_7.o fhf_8.o fhf_9.o fhf_10.o fhf_16.o fhf_32.o fcr_1.o fcr_2.o fcr_3.o fcr_4.o fcr_5.o fcr_6.o fcr_7.o fcr_8.o fcr_9.o fcr_10.o fcr_11.o fcr_12.o fcr_13.o fcr_14.o fcr_15.o fcr_16.o fcr_32.o fcr_64.o fcr_128.o fhb_2.o fhb_3.o fhb_4.o fhb_5.o fhb_6.o fhb_7.o fhb_8.o fhb_9.o fhb_10.o fhb_16.o fhb_32.o rconfig.o rplanner.o rexec.o rexec2.o rfftwnd.o rgeneric.o rfftwf77.o ranlib .libs/libdrfftw.a creating libdrfftw.la (cd .libs && rm -f libdrfftw.la && ln -s ../libdrfftw.la libdrfftw.la) rm -f drfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./rfftw.h > drfftw.h make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/rfftw' /bin/sh ../mkinstalldirs /opt/amber11/lib /bin/sh ../libtool --mode=install /usr/bin/install -c libdrfftw.la /opt/amber11/lib/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.lai /opt/amber11/lib/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.a /opt/amber11/lib/libdrfftw.a ranlib /opt/amber11/lib/libdrfftw.a chmod 644 /opt/amber11/lib/libdrfftw.a PATH="$PATH:/sbin" ldconfig -n /opt/amber11/lib ---------------------------------------------------------------------- Libraries have been installed in: /opt/amber11/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /opt/amber11/include /usr/bin/install -c -m 644 drfftw.h /opt/amber11/include/drfftw.h make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/rfftw' Making install in tests make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/tests' if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT fftw_test.o -MD -MP -MF ".deps/fftw_test.Tpo" \ -c -o fftw_test.o `test -f 'fftw_test.c' || echo './'`fftw_test.c; \ then mv ".deps/fftw_test.Tpo" ".deps/fftw_test.Po"; \ else rm -f ".deps/fftw_test.Tpo"; exit 1; \ fi if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT test_main.o -MD -MP -MF ".deps/test_main.Tpo" \ -c -o test_main.o `test -f 'test_main.c' || echo './'`test_main.c; \ then mv ".deps/test_main.Tpo" ".deps/test_main.Po"; \ else rm -f ".deps/test_main.Tpo"; exit 1; \ fi /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o fftw_test fftw_test.o test_main.o ../fftw/libdfftw.la -lm mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o fftw_test fftw_test.o test_main.o ../fftw/.libs/libdfftw.a -lm if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT rfftw_test.o -MD -MP -MF ".deps/rfftw_test.Tpo" \ -c -o rfftw_test.o `test -f 'rfftw_test.c' || echo './'`rfftw_test.c; \ then mv ".deps/rfftw_test.Tpo" ".deps/rfftw_test.Po"; \ else rm -f ".deps/rfftw_test.Tpo"; exit 1; \ fi /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rfftw_test rfftw_test.o test_main.o ../rfftw/libdrfftw.la ../fftw/libdfftw.la -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rfftw_test rfftw_test.o test_main.o ../rfftw/.libs/libdrfftw.a ../fftw/.libs/libdfftw.a -lm make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/tests' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/tests' Making install in doc make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Nothing to be done for `install-exec-am'. /bin/sh ../mkinstalldirs /opt/amber11/info mkdir -p -- /opt/amber11/info /usr/bin/install -c -m 644 ./fftw.info /opt/amber11/info/fftw.info /usr/bin/install -c -m 644 ./fftw.info-1 /opt/amber11/info/fftw.info-1 /usr/bin/install -c -m 644 ./fftw.info-2 /opt/amber11/info/fftw.info-2 /usr/bin/install -c -m 644 ./fftw.info-3 /opt/amber11/info/fftw.info-3 /usr/bin/install -c -m 644 ./fftw.info-4 /opt/amber11/info/fftw.info-4 /usr/bin/install -c -m 644 ./fftw.info-5 /opt/amber11/info/fftw.info-5 install-info --info-dir=/opt/amber11/info /opt/amber11/info/fftw.info install-info: warning: no info dir entry in `/opt/amber11/info/fftw.info' make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/doc' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/doc' Making install in threads make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/threads' make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/threads' /bin/sh ../mkinstalldirs /opt/amber11/lib /bin/sh ../mkinstalldirs /opt/amber11/include make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/threads' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/threads' Making install in mpi make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/mpi' make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5/mpi' /bin/sh ../mkinstalldirs /opt/amber11/lib /bin/sh ../mkinstalldirs /opt/amber11/include make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5' make[4]: Entering directory `/opt/amber11/AmberTools/src/fftw-2.1.5' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5' make[3]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5' make[2]: Leaving directory `/opt/amber11/AmberTools/src/fftw-2.1.5' cd ../rism && make librism && \ rm -f amber_rism_interface.o && make amber_rism_interface.o make[2]: Entering directory `/opt/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ safemem.f > _safemem.f gfortran -c -O3 -mtune=generic -ffree-form -o safemem.o _safemem.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solu_c.f > _rism3d_solu_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_solu_c.o _rism3d_solu_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solv_c.f > _rism3d_solv_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_solv_c.o _rism3d_solv_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_fft.f > _rism_fft.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_fft.o _rism_fft.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_orig_c.f > _mdiis_orig_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_orig_c.o _mdiis_orig_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_blas_c.f > _mdiis_blas_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_blas_c.o _mdiis_blas_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_c.f > _mdiis_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_c.o _mdiis_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_csv.f > _rism3d_csv.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_csv.o _rism3d_csv.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_c.f > _rism3d_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_c.o _rism3d_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_opendx.f > _rism3d_opendx.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_opendx.o _rism3d_opendx.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ fce_c.f > _fce_c.f gfortran -c -O3 -mtune=generic -ffree-form -o fce_c.o _fce_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ blend.f > _blend.f gfortran -c -O3 -mtune=generic -ffree-form -o blend.o _blend.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rdxvv.f > _rdxvv.f gfortran -c -O0 -ffree-form -o rdxvv.o _rdxvv.f ar rv /opt/amber11/lib/librism.a quaternion.o rism_util.o rism3d_c.o safemem.o rism3d_csv.o rism3d_opendx.o rism3d_solv_c.o rism3d_solu_c.o fce_c.o erfcfun.o blend.o rdxvv.o mdiis_orig_c.o mdiis_blas_c.o mdiis_c.o rism_fft.o ar: creating /opt/amber11/lib/librism.a a - quaternion.o a - rism_util.o a - rism3d_c.o a - safemem.o a - rism3d_csv.o a - rism3d_opendx.o a - rism3d_solv_c.o a - rism3d_solu_c.o a - fce_c.o a - erfcfun.o a - blend.o a - rdxvv.o a - mdiis_orig_c.o a - mdiis_blas_c.o a - mdiis_c.o a - rism_fft.o ranlib /opt/amber11/lib/librism.a make[2]: Leaving directory `/opt/amber11/AmberTools/src/rism' make[2]: Entering directory `/opt/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ amber_rism_interface.f > _amber_rism_interface.f gfortran -c -O3 -mtune=generic -ffree-form -o amber_rism_interface.o _amber_rism_interface.f make[2]: Leaving directory `/opt/amber11/AmberTools/src/rism' cd ../lib; make amopen.o; make nxtsec.o make[2]: Entering directory `/opt/amber11/AmberTools/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/opt/amber11/AmberTools/src/lib' make[2]: Entering directory `/opt/amber11/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/opt/amber11/AmberTools/src/lib' rm -f libnab.a if [ "librism" = 'librism' ]; then \ mkdir -p /opt/amber11/lib/temp; \ cd /opt/amber11/lib/temp; \ for lib in /opt/amber11/lib/libdrfftw.a /opt/amber11/lib/libdfftw.a; do \ ar x ${lib}; \ done;\ fi ar rv libnab.a ../sff/binpos.o ../sff/conjgrad.o ../sff/lmodC.o ../sff/nblist.o ../sff/newton.o ../sff/nmode.o ../sff/memutil.o ../sff/prm.o ../sff/rand2.o ../sff/sasad.o ../sff/sff.o ../sff/time.o ../sff/traceback.o ../sff/xminC.o allatom_to_dna3.o axis2frame.o bonded_atoms.o boundsutil.o chirvol.o database.o deform_ener.o dna3.o dna3_to_allatom.o dump.o embed.o fd_helix.o frameutil.o getdist.o hashutil.o jacobi.o match.o matop.o molio.o molsurf.o molutil.o nab2avs.o nab2geom.o pointutil.o prm.o regexp.o reslib.o select_atoms.o mme_init.o stringutil.o temputil.o tm_malloc.o bdna.o dg_helix.o getchivol.o getres.o getseq_from_pdb.o getxyz_from_pdb.o getpdb_prm.o getpdb_rlb.o linkprot.o link_na.o na_anal.o setboundsfromdb.o setchiplane.o wc_basepair.o wc_complement.o wc_helix.o yammp.o ../pbsa/interface.o ../pbsa/pbsaapi.o ../pbsa/myopen.o ../pbsa/pb_read.LIBPBSA.o ../pbsa/pb_force.o ../pbsa/sa_driver.o ../pbsa/pb_nlsolver.o ../pbsa/pb_lsolver.o ../pbsa/dsvdc.o ../pbsa/timer.o ../pbsa/pb_init.o ../pbsa/pb_exmol.o ../pbsa/np_force.o ../pbsa/pb_direct.o ../pbsa/pb_list.o ../pbsa/pb_write.o ../pbsa/pb_mpfrc.o ../pbsa/decomp.o ../pbsa/rgroup.o ../pbsa/rfree.o ../rism/quaternion.o ../rism/rism_util.o ../rism/rism3d_c.o ../rism/safemem.o ../rism/rism3d_csv.o ../rism/rism3d_opendx.o ../rism/rism3d_solv_c.o ../rism/rism3d_solu_c.o ../rism/fce_c.o ../rism/blend.o ../rism/rdxvv.o ../rism/mdiis_orig_c.o ../rism/mdiis_blas_c.o ../rism/mdiis_c.o ../rism/rism_fft.o ../rism/erfcfun.o ../rism/amber_rism_interface.o ../lib/amopen.o ../lib/nxtsec.o /opt/amber11/lib/temp/* ar: creating libnab.a a - ../sff/binpos.o a - ../sff/conjgrad.o a - ../sff/lmodC.o a - ../sff/nblist.o a - ../sff/newton.o a - ../sff/nmode.o a - ../sff/memutil.o a - ../sff/prm.o a - ../sff/rand2.o a - ../sff/sasad.o a - ../sff/sff.o a - ../sff/time.o a - ../sff/traceback.o a - ../sff/xminC.o a - allatom_to_dna3.o a - axis2frame.o a - bonded_atoms.o a - boundsutil.o a - chirvol.o a - database.o a - deform_ener.o a - dna3.o a - dna3_to_allatom.o a - dump.o a - embed.o a - fd_helix.o a - frameutil.o a - getdist.o a - hashutil.o a - jacobi.o a - match.o a - matop.o a - molio.o a - molsurf.o a - molutil.o a - nab2avs.o a - nab2geom.o a - pointutil.o a - prm.o a - regexp.o a - reslib.o a - select_atoms.o a - mme_init.o a - stringutil.o a - temputil.o a - tm_malloc.o a - bdna.o a - dg_helix.o a - getchivol.o a - getres.o a - getseq_from_pdb.o a - getxyz_from_pdb.o a - getpdb_prm.o a - getpdb_rlb.o a - linkprot.o a - link_na.o a - na_anal.o a - setboundsfromdb.o a - setchiplane.o a - wc_basepair.o a - wc_complement.o a - wc_helix.o a - yammp.o a - ../pbsa/interface.o a - ../pbsa/pbsaapi.o a - ../pbsa/myopen.o a - ../pbsa/pb_read.LIBPBSA.o a - ../pbsa/pb_force.o a - ../pbsa/sa_driver.o a - ../pbsa/pb_nlsolver.o a - ../pbsa/pb_lsolver.o a - ../pbsa/dsvdc.o a - ../pbsa/timer.o a - ../pbsa/pb_init.o a - ../pbsa/pb_exmol.o a - ../pbsa/np_force.o a - ../pbsa/pb_direct.o a - ../pbsa/pb_list.o a - ../pbsa/pb_write.o a - ../pbsa/pb_mpfrc.o a - ../pbsa/decomp.o a - ../pbsa/rgroup.o a - ../pbsa/rfree.o a - ../rism/quaternion.o a - ../rism/rism_util.o a - ../rism/rism3d_c.o a - ../rism/safemem.o a - ../rism/rism3d_csv.o a - ../rism/rism3d_opendx.o a - ../rism/rism3d_solv_c.o a - ../rism/rism3d_solu_c.o a - ../rism/fce_c.o a - ../rism/blend.o a - ../rism/rdxvv.o a - ../rism/mdiis_orig_c.o a - ../rism/mdiis_blas_c.o a - ../rism/mdiis_c.o a - ../rism/rism_fft.o a - ../rism/erfcfun.o a - ../rism/amber_rism_interface.o a - ../lib/amopen.o a - ../lib/nxtsec.o a - /opt/amber11/lib/temp/config.o a - /opt/amber11/lib/temp/executor.o a - /opt/amber11/lib/temp/fcr_10.o a - /opt/amber11/lib/temp/fcr_11.o a - /opt/amber11/lib/temp/fcr_128.o a - /opt/amber11/lib/temp/fcr_12.o a - /opt/amber11/lib/temp/fcr_13.o a - /opt/amber11/lib/temp/fcr_14.o a - /opt/amber11/lib/temp/fcr_15.o a - /opt/amber11/lib/temp/fcr_16.o a - /opt/amber11/lib/temp/fcr_1.o a - /opt/amber11/lib/temp/fcr_2.o a - /opt/amber11/lib/temp/fcr_32.o a - /opt/amber11/lib/temp/fcr_3.o a - /opt/amber11/lib/temp/fcr_4.o a - /opt/amber11/lib/temp/fcr_5.o a - /opt/amber11/lib/temp/fcr_64.o a - /opt/amber11/lib/temp/fcr_6.o a - /opt/amber11/lib/temp/fcr_7.o a - /opt/amber11/lib/temp/fcr_8.o a - /opt/amber11/lib/temp/fcr_9.o a - /opt/amber11/lib/temp/fftwf77.o a - /opt/amber11/lib/temp/fftwnd.o a - /opt/amber11/lib/temp/fhb_10.o a - /opt/amber11/lib/temp/fhb_16.o a - /opt/amber11/lib/temp/fhb_2.o a - /opt/amber11/lib/temp/fhb_32.o a - /opt/amber11/lib/temp/fhb_3.o a - /opt/amber11/lib/temp/fhb_4.o a - /opt/amber11/lib/temp/fhb_5.o a - /opt/amber11/lib/temp/fhb_6.o a - /opt/amber11/lib/temp/fhb_7.o a - /opt/amber11/lib/temp/fhb_8.o a - /opt/amber11/lib/temp/fhb_9.o a - /opt/amber11/lib/temp/fhf_10.o a - /opt/amber11/lib/temp/fhf_16.o a - /opt/amber11/lib/temp/fhf_2.o a - /opt/amber11/lib/temp/fhf_32.o a - /opt/amber11/lib/temp/fhf_3.o a - /opt/amber11/lib/temp/fhf_4.o a - /opt/amber11/lib/temp/fhf_5.o a - /opt/amber11/lib/temp/fhf_6.o a - /opt/amber11/lib/temp/fhf_7.o a - /opt/amber11/lib/temp/fhf_8.o a - /opt/amber11/lib/temp/fhf_9.o a - /opt/amber11/lib/temp/fn_10.o a - /opt/amber11/lib/temp/fn_11.o a - /opt/amber11/lib/temp/fn_12.o a - /opt/amber11/lib/temp/fn_13.o a - /opt/amber11/lib/temp/fn_14.o a - /opt/amber11/lib/temp/fn_15.o a - /opt/amber11/lib/temp/fn_16.o a - /opt/amber11/lib/temp/fn_1.o a - /opt/amber11/lib/temp/fn_2.o a - /opt/amber11/lib/temp/fn_32.o a - /opt/amber11/lib/temp/fn_3.o a - /opt/amber11/lib/temp/fn_4.o a - /opt/amber11/lib/temp/fn_5.o a - /opt/amber11/lib/temp/fn_64.o a - /opt/amber11/lib/temp/fn_6.o a - /opt/amber11/lib/temp/fn_7.o a - /opt/amber11/lib/temp/fn_8.o a - /opt/amber11/lib/temp/fn_9.o a - /opt/amber11/lib/temp/fni_10.o a - /opt/amber11/lib/temp/fni_11.o a - /opt/amber11/lib/temp/fni_12.o a - /opt/amber11/lib/temp/fni_13.o a - /opt/amber11/lib/temp/fni_14.o a - /opt/amber11/lib/temp/fni_15.o a - /opt/amber11/lib/temp/fni_16.o a - /opt/amber11/lib/temp/fni_1.o a - /opt/amber11/lib/temp/fni_2.o a - /opt/amber11/lib/temp/fni_32.o a - /opt/amber11/lib/temp/fni_3.o a - /opt/amber11/lib/temp/fni_4.o a - /opt/amber11/lib/temp/fni_5.o a - /opt/amber11/lib/temp/fni_64.o a - /opt/amber11/lib/temp/fni_6.o a - /opt/amber11/lib/temp/fni_7.o a - /opt/amber11/lib/temp/fni_8.o a - /opt/amber11/lib/temp/fni_9.o a - /opt/amber11/lib/temp/frc_10.o a - /opt/amber11/lib/temp/frc_11.o a - /opt/amber11/lib/temp/frc_128.o a - /opt/amber11/lib/temp/frc_12.o a - /opt/amber11/lib/temp/frc_13.o a - /opt/amber11/lib/temp/frc_14.o a - /opt/amber11/lib/temp/frc_15.o a - /opt/amber11/lib/temp/frc_16.o a - /opt/amber11/lib/temp/frc_1.o a - /opt/amber11/lib/temp/frc_2.o a - /opt/amber11/lib/temp/frc_32.o a - /opt/amber11/lib/temp/frc_3.o a - /opt/amber11/lib/temp/frc_4.o a - /opt/amber11/lib/temp/frc_5.o a - /opt/amber11/lib/temp/frc_64.o a - /opt/amber11/lib/temp/frc_6.o a - /opt/amber11/lib/temp/frc_7.o a - /opt/amber11/lib/temp/frc_8.o a - /opt/amber11/lib/temp/frc_9.o a - /opt/amber11/lib/temp/ftw_10.o a - /opt/amber11/lib/temp/ftw_16.o a - /opt/amber11/lib/temp/ftw_2.o a - /opt/amber11/lib/temp/ftw_32.o a - /opt/amber11/lib/temp/ftw_3.o a - /opt/amber11/lib/temp/ftw_4.o a - /opt/amber11/lib/temp/ftw_5.o a - /opt/amber11/lib/temp/ftw_64.o a - /opt/amber11/lib/temp/ftw_6.o a - /opt/amber11/lib/temp/ftw_7.o a - /opt/amber11/lib/temp/ftw_8.o a - /opt/amber11/lib/temp/ftw_9.o a - /opt/amber11/lib/temp/ftwi_10.o a - /opt/amber11/lib/temp/ftwi_16.o a - /opt/amber11/lib/temp/ftwi_2.o a - /opt/amber11/lib/temp/ftwi_32.o a - /opt/amber11/lib/temp/ftwi_3.o a - /opt/amber11/lib/temp/ftwi_4.o a - /opt/amber11/lib/temp/ftwi_5.o a - /opt/amber11/lib/temp/ftwi_64.o a - /opt/amber11/lib/temp/ftwi_6.o a - /opt/amber11/lib/temp/ftwi_7.o a - /opt/amber11/lib/temp/ftwi_8.o a - /opt/amber11/lib/temp/ftwi_9.o a - /opt/amber11/lib/temp/generic.o a - /opt/amber11/lib/temp/malloc.o a - /opt/amber11/lib/temp/planner.o a - /opt/amber11/lib/temp/putils.o a - /opt/amber11/lib/temp/rader.o a - /opt/amber11/lib/temp/rconfig.o a - /opt/amber11/lib/temp/rexec2.o a - /opt/amber11/lib/temp/rexec.o a - /opt/amber11/lib/temp/rfftwf77.o a - /opt/amber11/lib/temp/rfftwnd.o a - /opt/amber11/lib/temp/rgeneric.o a - /opt/amber11/lib/temp/rplanner.o a - /opt/amber11/lib/temp/timer.o a - /opt/amber11/lib/temp/twiddle.o a - /opt/amber11/lib/temp/wisdomio.o a - /opt/amber11/lib/temp/wisdom.o rm -rf /opt/amber11/lib/temp ranlib libnab.a gcc -DBINDIR='"/opt/amber11/bin"' \ -DINCDIR='"/opt/amber11/include"' \ -DLIBDIR='"/opt/amber11/lib"' \ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DCC='"gcc"' -DCPP='"/opt/amber11/bin/ucpp -l"' -DFLIBS='"/opt/amber11/lib/arpack.a /opt/GotoBLAS2/libgoto2.a -lpthread -lgfortran "' \ -o nab_install nab.c mv -f nab_install /opt/amber11/bin/nab mv -f nab2c /opt/amber11/bin mv -f libnab.a /opt/amber11/lib rm -f /opt/amber11/include/nabcode.h /opt/amber11/include/defreal.h /opt/amber11/include/nab.h cp nabcode.h /opt/amber11/include cp nabtypes.h /opt/amber11/include cp defreal.h /opt/amber11/include cp nab.h /opt/amber11/include cp xmin_opt.h lmod_opt.h /opt/amber11/include cp lmodprmtop /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/nab' (cd nss && make install ) make[1]: Entering directory `/opt/amber11/AmberTools/src/nss' /opt/amber11/bin/nab -c symop.nab symop.c: In function ‘MAT_ico’: symop.c:219: warning: passing argument 2 of ‘rot4p’ from incompatible pointer type /opt/amber11/include/nabcode.h:186: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ /opt/amber11/bin/nab -c matop.c /opt/amber11/bin/nab -c tss.c ar rv /opt/amber11/lib/libnab.a symop.o matop.o tss.o a - symop.o r - matop.o a - tss.o ranlib /opt/amber11/lib/libnab.a /opt/amber11/bin/nab -c matextract.nab /opt/amber11/bin/nab -o matextract matextract.o /opt/amber11/bin/nab -c matgen.nab /opt/amber11/bin/nab -o matgen matgen.o /opt/amber11/bin/nab -c matmerge.nab /opt/amber11/bin/nab -o matmerge matmerge.o /opt/amber11/bin/nab -c matmul.nab /opt/amber11/bin/nab -o matmul matmul.o /opt/amber11/bin/nab -c transform.nab transform.c: In function ‘main’: transform.c:73: warning: passing argument 3 of ‘setxyz_from_mol’ from incompatible pointer type /opt/amber11/include/nabcode.h:205: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ transform.c:76: warning: passing argument 3 of ‘setmol_from_xyz’ from incompatible pointer type /opt/amber11/include/nabcode.h:199: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ transform.c:112: warning: passing argument 2 of ‘transformpts’ from incompatible pointer type /opt/amber11/include/nabcode.h:219: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ /opt/amber11/bin/nab -o transform transform.o /opt/amber11/bin/nab -c tss_init.nab /opt/amber11/bin/nab -o tss_init tss_init.o /opt/amber11/bin/nab -c tss_main.nab tss_main.c: In function ‘main’: tss_main.c:299: warning: passing argument 3 of ‘setxyz_from_mol’ from incompatible pointer type /opt/amber11/include/nabcode.h:205: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ tss_main.c:300: warning: passing argument 2 of ‘transformpts’ from incompatible pointer type /opt/amber11/include/nabcode.h:219: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ tss_main.c:301: warning: passing argument 3 of ‘setmol_from_xyz’ from incompatible pointer type /opt/amber11/include/nabcode.h:199: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ /opt/amber11/bin/nab -o tss_main tss_main.o tss_main.o: In function `main': tss_main.c:(.text+0xb6b): warning: the use of `tmpnam' is dangerous, better use `mkstemp' /opt/amber11/bin/nab -c tss_next.nab /opt/amber11/bin/nab -o tss_next tss_next.o mv matextract matgen matmerge matmul \ transform tss_init tss_main \ tss_next /opt/amber11/bin make[1]: Leaving directory `/opt/amber11/AmberTools/src/nss' Installation of AmberTools, version 1.4 serial is complete at Tue May 18 18:08:30 EEST 2010. ./test_at_serial.sh Error: DO_PARALLEL is set to /opt/openmpi-1.4-shared/bin/mpirun -np 4. This environment variable is being unset. make[1]: Entering directory `/opt/amber11/AmberTools/test' (find antechamber -name '*.out' -o -name '*.log' -o -name '*.lib' -o \ -name "*.dif" | \ while read dif ;\ do \ rm -f $dif ;\ done ;\ ) (cd leap && /bin/rm -f *.log *.out *.lib *.top ) (cd ptraj_rmsa && /bin/rm -f *.dif ) (cd ptraj_matrix && /bin/rm -f *.dif ) (cd ptraj_rms && /bin/rm -f *.dif ) (cd ptraj_les && /bin/rm -f *.dif ) (find sleap -name '*.out' -o -name '*.log' -o -name '*.lib' -o \ -name "*.dif" | \ while read dif ;\ do \ rm -f $dif ;\ done ;\ ) (find sqm -name '*.out' -o -name '*.dif' | \ while read dif ;\ do \ rm -f $dif ;\ done ;\ ) /bin/rm -f TEST_FAILURES.diff cd nab && make -k testlibrism make[2]: Entering directory `/opt/amber11/AmberTools/test/nab' Running test to make dna duplex: diffing d01.pdb.check with d01.pdb PASSED ============================================================== Running test to computed 3DNA deformation energies: diffing deform.out.check with deform.out PASSED ============================================================== Running Reflexive test: diffing ref.out.check with ref.out PASSED ============================================================== Running test of hashed arrays: diffing hash.out.check with hash.out PASSED ============================================================== Running test to compute chemical shifts (this tests many parts of the compiler and libraries) diffing 5pti.shifts.check with 5pti.shifts PASSED ============================================================== Running test to do simple minimization (this tests the molecular mechanics interface) diffing ltest.out.check with ltest.out PASSED ============================================================== Running test to do simple minimization with shake (this tests the molecular mechanics interface) diffing rattle_min.out.check with rattle_min.out PASSED ============================================================== Running test of fibre-diffraction module diffing fd.pdb.check with fd.pdb PASSED ============================================================== Running test to do simple minimization (this tests the generalized Born implementation) diffing gbrna.out.check with gbrna.out PASSED ============================================================== Running test to do simple minimization (this tests the generalized Born implementation) diffing xfin_sa.out.check with xfin_sa.out PASSED ============================================================== Running test to do simple minimization (this tests the LCPO surface area) diffing gbrna_sa.out.check with gbrna_sa.out PASSED ============================================================== Running test to do simple minimization (this tests the ao generalized Born implementation) diffing gbtrx.out.check with gbtrx.out PASSED ============================================================== Running test to do molecular dynamics with rattle diffing rattle_md.out.check with rattle_md.out PASSED ============================================================== Running test of randomized embedding diffing rembed.out.check with rembed.out PASSED ============================================================== Running test to compute NAB energy of 3dfr minus waters. Compare the NAB energy with the previously computed Amber energy: Amber8 total energy is 5184.0880 NAB total energy is 5184.0880 diffing dhfrndpmtx.out.check with dhfrndpmtx.out PASSED ============================================================== Running test to compute GB Newton-Raphson and normal modes: ./Run.asp: line 8: 2409 Segmentation fault (core dumped) ( $DO_PARALLEL ./asp > asp.out.tmp ) ./Run.asp: Program error make[2]: *** [asp_test] Error 1 Running test to compute non-GB Newton-Raphson and normal modes: ./Run.aspnb: line 8: 2425 Segmentation fault (core dumped) $DO_PARALLEL ./aspnb > aspnb.out.tmp ./Run.aspnb: Program error make[2]: *** [aspnb_test] Error 1 Running test to create Amber force-field description diffing prm.out.check with prm.out PASSED ============================================================== checking the prmtop file: diffing tprmtop.check with tprmtop1 PASSED ============================================================== Running test to create a simple mmCIF file diffing gbrna.cif.check with gbrna.cif PASSED ============================================================== Running test to do simple xmin minimization diffing txmin.out.check with txmin.out PASSED ============================================================== Running test to do simple lmod optimization diffing tlmod.out.check with tlmod.out PASSED ============================================================== Running test to compute GB normal modes using DSYEVD: ./Run.nmode1: line 8: 2612 Segmentation fault (core dumped) $DO_PARALLEL ./asp_nm1 > asp_nm1.out.tmp ./Run.nmode1: Program error make[2]: *** [nmode1_test] Error 1 Running test to compute GB normal modes using DSAUPD: ./Run.nmode2: line 8: 2626 Segmentation fault (core dumped) $DO_PARALLEL ./asp_nm2 > asp_nm2.out.tmp ./Run.nmode2: Program error make[2]: *** [nmode2_test] Error 1 Running test to compute Langevin modes: ./Run.nmode3: line 8: 2640 Segmentation fault (core dumped) $DO_PARALLEL ./asp_nm3 > asp_nm3.out.tmp ./Run.nmode3: Program error make[2]: *** [nmode3_test] Error 1 Running test of the isotropic periodic sum technique diffing dhfr_ips.out.check with dhfr_ips.out PASSED ============================================================== Running test to do simple minimization (libpbsa) (this tests the PBSA implementation) diffing pbdmp.out.check with pbdmp.out PASSED ============================================================== Running test to do simple minimization (librism) (this tests the 3D-RISM implementation) ./Run.rism_min: line 35: 2726 Segmentation fault (core dumped) $DO_PARALLEL ./sff > rismdmp.out ./Run.rism_min: Program error make[2]: *** [rism_test] Error 1 Running test to do basic MD (librism) (this tests the 3D-RISM-KH implementation) ./Run.rism_md: line 34: 2740 Segmentation fault (core dumped) $DO_PARALLEL ./sff > rismala.out ./Run.rism_md: Program error make[2]: *** [rism_md_test] Error 1 Running test to do basic MD (librism) (this tests the 3D-RISM-KH precission) ./Run.rism_dist: line 28: 2754 Segmentation fault (core dumped) $DO_PARALLEL ./sff > rismdist.out ./Run.rism_dist: Program error make[2]: *** [rism_dist] Error 1 Running test to do basic MD (librism) (this tests the 3D-RISM-HNC implementation) ./Run.rism_hnc: line 32: 2768 Segmentation fault (core dumped) $DO_PARALLEL ./sff > rismhnc.out ./Run.rism_hnc: Program error make[2]: *** [rism_hnc] Error 1 make[2]: Target `testlibrism' not remade because of errors. make[2]: Leaving directory `/opt/amber11/AmberTools/test/nab' make[1]: *** [test.nab] Error 2 cd ptraj_rmsa && ./Run.rms diffing rms.dat.save with rms.dat PASSED ============================================================== cd ptraj_rms && ./Run.rms ptraj: test rms and 2drms commands diffing rms_fit.dat.save with rms_fit.dat PASSED ============================================================== diffing rms_nofit.dat.save with rms_nofit.dat PASSED ============================================================== diffing rms2d.ps.save with rms2d.ps PASSED ============================================================== cd ptraj_matrix && ./Run.matrix ptraj: analyze fluctuation matrices Segmentation fault (core dumped) ./Run.matrix: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_order && ./Run.order ptraj: calculate S^2 parameters and relaxation rates via IRED matrix Segmentation fault (core dumped) ./Run.order: Program error make[1]: [test.ptraj] Error 1 (ignored) cd ptraj_trajectory && ./Run.ptraj ptraj: Test processing of trajectories with offsets and compression. diffing rem.crd.combined.save with rem.crd.combined PASSED ============================================================== diffing rem.crd.combined.save with gzip.rem.crd.combined PASSED ============================================================== diffing rem.crd.combined.save with bzip2.rem.crd.combined PASSED ============================================================== cd ptraj_remd_netcdf && ./Run.ptraj netcdf.mod ptraj: Test processing of REMD trajectories. diffing dist.crd.dat.save with dist.crd.dat PASSED ============================================================== ptraj: Test processing of NetCDF REMD trajectories. diffing dist.dat.save with dist.dat PASSED ============================================================== cd ptraj_comprehensive && ./Run.comprehensive netcdf.mod ptraj: Test multiple ptraj actions. diffing dist_end_to_end.list.save with dist_end_to_end.list PASSED ============================================================== diffing omega.save with omega PASSED ============================================================== diffing phi.save with phi PASSED ============================================================== diffing psi.save with psi PASSED ============================================================== diffing watershell.list.save with watershell.list PASSED ============================================================== diffing test.mdcrd.save with test.mdcrd PASSED ============================================================== testing NetCDF... diffing trajectory.mdcrd with trajectory_test.mdcrd PASSED ============================================================== cd antechamber/top2mol2 && ./Run.top2mol2 diffing sustiva.mol2.save with sustiva.mol2 PASSED ============================================================== diffing dna.mol2.save with dna.mol2 PASSED ============================================================== diffing dna_wat.mol2.save with dna_wat.mol2 PASSED ============================================================== diffing aa.mol2.save with aa.mol2 PASSED ============================================================== cd antechamber/database && ./Run.database diffing total.frcmod.save with total.frcmod PASSED ============================================================== diffing total.prepi.save with total.prepi PASSED ============================================================== cd antechamber/bondtype && ./Run.bondtype diffing ABAKOE.prepi.save with ABAKOE.prepi PASSED ============================================================== diffing PFPHHG02.prepi.save with PFPHHG02.prepi PASSED ============================================================== diffing fluorescein2.mol2.save with fluorescein2.mol2 PASSED ============================================================== diffing fluorescein_f2.mol2.save with fluorescein_f2.mol2 PASSED ============================================================== cd antechamber/c60 && ./Run.c60 diffing buckyball.mol2.save with buckyball.mol2 PASSED ============================================================== diffing buckyball.gzmat.save with buckyball.gzmat PASSED ============================================================== diffing buckyball.jcrt.save with buckyball.jcrt PASSED ============================================================== diffing buckyball.prepi.save with buckyball.prepi PASSED ============================================================== diffing buckyball.ac.save with buckyball.ac PASSED ============================================================== cd antechamber/charmm && ./Run.charmm diffing ala2.inp.save with ala2.inp PASSED ============================================================== diffing ala2.rtf.save with ala2.rtf PASSED ============================================================== diffing ala2.prm.save with ala2.prm PASSED ============================================================== diffing ala2_charmm.mol2.save with ala2_charmm.mol2 PASSED ============================================================== cd antechamber/chemokine && ./Run.1b2t diffing 1b2t.mol2.save with 1b2t.mol2 PASSED ============================================================== diffing 1b2t.ac.save with 1b2t.ac PASSED ============================================================== cd antechamber/tp && ./Run.tp ./Run.tp: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/ash && ./Run.ash ./Run.ash: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/sustiva && ./Run.sustiva ./Run.sustiva: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/fluorescein && ./Run.fluorescein ./Run.fluorescein: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/guanine_amber && ./Run.guanine_amber ./Run.guanine_amber: Program error make[1]: [test.antechamber] Error 1 (ignored) cd antechamber/fpph && ./Run.fpph_resp diffing fpph_resp.mol2.save with fpph_resp.mol2 PASSED ============================================================== cd antechamber/residuegen && ./Run.ala diffing ala.ac.save with ala.ac PASSED ============================================================== diffing ala.esp.save with ala.esp PASSED ============================================================== diffing ala.prep.save with ala.prep PASSED ============================================================== cd leap && ./Run.tleap AMBERHOME is set to /opt/amber11 Running leap tests on ./tleap -> ../../exe/teLeap building force field libraries: '91 ff.. diffing /opt/amber11/dat/leap/lib/all_amino91.lib with all_amino91.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_aminoct91.lib with all_aminoct91.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_aminont91.lib with all_aminont91.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_nucleic91.lib with all_nucleic91.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/ions91.lib with ions91.lib PASSED ============================================================== '94 ff.. diffing /opt/amber11/dat/leap/lib/all_amino94.lib with all_amino94.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_aminoct94.lib with all_aminoct94.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_aminont94.lib with all_aminont94.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/all_nucleic94.lib with all_nucleic94.lib PASSED ============================================================== diffing /opt/amber11/dat/leap/lib/ions94.lib with ions94.lib PASSED ============================================================== loadpdb and saveamberparm: 94 ff.. - aminoan94 comparing topology to earlier leap version.. diffing ff94/all_aminoan94.top with all_aminoan94.top PASSED ============================================================== - aminonc94 comparing topology to earlier leap version.. diffing ff94/all_aminonc94.top with all_aminonc94.top PASSED ============================================================== - dna94 comparing topology to earlier leap version.. diffing ff94/all_dna94.top with all_dna94.top PASSED ============================================================== - rna94 comparing topology to earlier leap version.. diffing ff94/all_rna94.top with all_rna94.top PASSED ============================================================== -------------------------------------------------------------- Notes: - If all tests PASSED, you can 'rm *.log *.out *.lib *.top' - For a discussion of energy differences (sander*.dif) see 0README. - It is common to see round-off differences in the portion of these tests -------------------------------------------------------------- cd sleap && make -k test make[2]: Entering directory `/opt/amber11/AmberTools/test/sleap' /bin/rm -f `find . -name "*.dif"` /bin/rm -f TEST_FAILURES.diff cd mdlsdf; ./Run.mdlsdf diffing crown_2.sdf.save with crown_2.sdf PASSED ============================================================== cd tripos; ./Run.tripos diffing wy.mol2.save with wy.mol2 PASSED ============================================================== cd pdbent; ./Run.pdbent1 diffing 1hpv.mol2.save with 1hpv.mol2 PASSED ============================================================== cd pdbent; ./Run.pdbent2 diffing mdl_1hpv.mol2.save with mdl_1hpv.mol2 PASSED ============================================================== cd offlib; ./Run.off diffing hpv.off.save with hpv.off PASSED ============================================================== cd source; ./Run.source diffing source.out.save with source.out PASSED ============================================================== cd prmtop; ./Run.prmtop1 diffing hpv.top.save with hpv.top PASSED ============================================================== diffing hpv.xyz.save with hpv.xyz PASSED ============================================================== cd prmtop; ./Run.prmtop2 This is a long test; please wait patiently... diffing box.out.save with box.out PASSED ============================================================== diffing hpv_box.top.save with hpvbox.top PASSED ============================================================== cd prmtop; ./Run.prmtop3 This is a long test; please wait patiently... diffing hpv_cap.top.save with hpv_cap.top PASSED ============================================================== cd prmtop; ./Run.prmtoppol diffing ubqpol.top.save with ubqpol.top PASSED ============================================================== diffing ubqpol.xyz.save with ubqpol.xyz PASSED ============================================================== cd solvate; ./Run.solvatebox This is a long test; please wait patiently... diffing hpvbox.pdb.save with hpvbox.pdb PASSED ============================================================== diffing hpvbox.top.save with hpvbox.top PASSED ============================================================== cd solvate; ./Run.solvatebox_closeness This is a long test; please wait patiently... diffing hpvbox_closeness.pdb.save with hpvbox_closeness.pdb PASSED ============================================================== cd solvate; ./Run.solvatecap diffing hpvcap.pdb.save with hpvcap.pdb PASSED ============================================================== cd solvate; ./Run.solvateoct This is a long test; please wait patiently... diffing hpvoct.pdb.save with hpvoct.pdb PASSED ============================================================== diffing hpvoct.top.save with hpvoct.top PASSED ============================================================== cd solvate; ./Run.solvateshell This is a long test; please wait patiently... diffing hpvshell.pdb.save with hpvshell.pdb PASSED ============================================================== cd amoeba; ./Run.amoeba diffing jac_2.prmtop.save with jac_2.prmtop PASSED ============================================================== cd amoeba; ./Run.amoeba_sol diffing hpv.prmtop.save with hpv.prmtop PASSED ============================================================== cd builder; ./Run.builder diffing water.mol2.save with water.mol2 PASSED ============================================================== diffing wat2.mol2.save with wat2.mol2 PASSED ============================================================== cd addions; ./Run.addions1 diffing hpv_ion.pdb.save with hpv_ion.pdb PASSED ============================================================== cd addions; ./Run.addions2 diffing hpv_ion2.pdb.save with hpv_ion2.pdb PASSED ============================================================== cd addions; ./Run.addions3 diffing 1zik_ion.mol2.save with 1zik_ion.mol2 PASSED ============================================================== cd molinfo; ./Run.molinfo diffing leap.out.save with leap.out PASSED ============================================================== cd polymer; ./Run.polymer diffing combine.mol2.save with combine.mol2 PASSED ============================================================== diffing sequence.mol2.save with sequence.mol2 PASSED ============================================================== cd polymer; ./Run.impose diffing impose.out.save with impose.out PASSED ============================================================== diffing impose.mol2.save with impose.mol2 PASSED ============================================================== cd polymer; ./Run.polymer2 diffing aa.mol2.save with aa.mol2 PASSED ============================================================== cd polymer; ./Run.zmatrix diffing zmatrix.out.save with zmatrix.out PASSED ============================================================== diffing meoh.mol2.save with meoh.mol2 PASSED ============================================================== cd bondbydis; ./Run.bondbydis diffing wy.sdf.save with wy.sdf PASSED ============================================================== cd DNA; ./Run.DNA1 diffing 132d.mol2.save with 132d.mol2 PASSED ============================================================== cd DNA; ./Run.DNA2 diffing 32d.top.save with 32d.top PASSED ============================================================== cd oldleap; ./Run.oldleap diffing ff91/all_amino91.lib.save with ff91/all_amino91.lib PASSED ============================================================== diffing ff91/all_aminont91.lib.save with ff91/all_aminont91.lib PASSED ============================================================== diffing ff91/all_aminoct91.lib.save with ff91/all_aminoct91.lib PASSED ============================================================== diffing ff91/all_nucleic91.lib.save with ff91/all_nucleic91.lib PASSED ============================================================== diffing ff94/all_amino94.lib.save with ff94/all_amino94.lib PASSED ============================================================== diffing ff94/all_aminont94.lib.save with ff94/all_aminont94.lib PASSED ============================================================== diffing ff94/all_aminoct94.lib.save with ff94/all_aminoct94.lib PASSED ============================================================== diffing ff94/all_nucleic94.lib.save with ff94/all_nucleic94.lib PASSED ============================================================== diffing ff94/all_aminoan94.top.save with ff94/all_aminoan94.top PASSED ============================================================== diffing ff94/all_aminoan94.crd.save with ff94/all_aminoan94.crd PASSED ============================================================== diffing ff94/all_aminonc94.top.save with ff94/all_aminonc94.top PASSED ============================================================== diffing ff94/all_aminonc94.crd.save with ff94/all_aminonc94.crd PASSED ============================================================== diffing ff94/all_dna94.top.save with ff94/all_dna94.top PASSED ============================================================== diffing ff94/all_dna94.crd.save with ff94/all_dna94.crd PASSED ============================================================== diffing ff94/all_rna94.top.save with ff94/all_rna94.top PASSED ============================================================== diffing ff94/all_rna94.crd.save with ff94/all_rna94.crd PASSED ============================================================== cd disulfide; ./Run.auto diffing crn.mol2.save with crn.mol2 PASSED ============================================================== cd disulfide; ./Run.manu diffing crn.mol2.save with crn.mol2 PASSED ============================================================== cd disulfide; ./Run.auto.H diffing crn.H.mol2.save with crn.H.mol2 PASSED ============================================================== diffing crn.top.save with crn.top PASSED ============================================================== diffing crn.xyz.save with crn.xyz PASSED ============================================================== cd propdiol; ./Run.test1 diffing mol.prmtop.save with mol.prmtop PASSED ============================================================== diffing test1.out.save with test1.out PASSED ============================================================== cd propdiol; ./Run.test2 diffing mol2.prmtop.save with mol2.prmtop PASSED ============================================================== diffing test2.out.save with test2.out PASSED ============================================================== cd glycam; ./Run.test1 diffing n.pdb.save with n.pdb PASSED ============================================================== cd transform; ./Run.translate diffing meoh_trans1.mol2.save with meoh_trans1.mol2 PASSED ============================================================== diffing meoh_trans2.mol2.save with meoh_trans2.mol2 PASSED ============================================================== cd 14scale; ./Run.14scale_test1 diffing nma1.prmtop.save with nma1.prmtop PASSED ============================================================== cd 14scale; ./Run.14scale_test2 diffing nma2.prmtop.save with nma2.prmtop PASSED ============================================================== ./cpTESTF.sh make[2]: Leaving directory `/opt/amber11/AmberTools/test/sleap' cd resp && ./Run.ade RESP stage 1: diffing ade_1st.out.save with ade_1st.out PASSED ============================================================== diffing ade_1st.pch.save with ade_1st.pch PASSED ============================================================== diffing ade_1st_calc.esp.save with ade_1st_calc.esp PASSED ============================================================== RESP stage 2: diffing ade_1st.chg.save with ade_1st.chg PASSED ============================================================== diffing ade_2nd.out.save with ade_2nd.out PASSED ============================================================== diffing ade_2nd.pch.save with ade_2nd.pch PASSED ============================================================== diffing ade_2nd.chg.save with ade_2nd.chg PASSED ============================================================== cd pbsa_dmp && ./Run.dmp.min Segmentation fault (core dumped) ./Run.dmp.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_lpb && ./Run.lsolver.min Segmentation fault (core dumped) ./Run.lsolver.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_tsr && ./Run.tsrb.min Segmentation fault (core dumped) ./Run.tsrb.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_radi && ./Run.ion.min Segmentation fault (core dumped) ./Run.ion.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_npb && ./test pbsa.ncg.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.ncg.bc6 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.nsor.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.nsor.bc6 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.asor.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.asor.bc6 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.dsor.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.dsor.bc6 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.ntmg.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.nticcg.bc5 Segmentation fault (core dumped) ./Run.110D.min: Program error pbsa.nticcg.bc6 Segmentation fault (core dumped) ./Run.110D.min: Program error cd pbsa_frc && ./test dbf_0.argasp Segmentation fault (core dumped) ./Run.argasp.min: Program error dbf_0.dadt Segmentation fault (core dumped) ./Run.dadt.min: Program error dbf_0.dgdc Segmentation fault (core dumped) ./Run.dgdc.min: Program error dbf_0.lysasp Segmentation fault (core dumped) ./Run.lysasp.min: Program error dbf_0.polyALA Segmentation fault (core dumped) ./Run.polyALA.min: Program error dbf_0.polyAT Segmentation fault (core dumped) ./Run.polyAT.min: Program error dbf_1.argasp Segmentation fault (core dumped) ./Run.argasp.min: Program error dbf_1.dadt Segmentation fault (core dumped) ./Run.dadt.min: Program error dbf_1.dgdc Segmentation fault (core dumped) ./Run.dgdc.min: Program error dbf_1.lysasp Segmentation fault (core dumped) ./Run.lysasp.min: Program error dbf_1.polyALA Segmentation fault (core dumped) ./Run.polyALA.min: Program error dbf_1.polyAT Segmentation fault (core dumped) ./Run.polyAT.min: Program error dbf_2.argasp Segmentation fault (core dumped) ./Run.argasp.min: Program error dbf_2.dadt Segmentation fault (core dumped) ./Run.dadt.min: Program error dbf_2.dgdc Segmentation fault (core dumped) ./Run.dgdc.min: Program error dbf_2.lysasp Segmentation fault (core dumped) ./Run.lysasp.min: Program error dbf_2.polyALA Segmentation fault (core dumped) ./Run.polyALA.min: Program error dbf_2.polyAT Segmentation fault (core dumped) ./Run.polyAT.min: Program error cd pbsa_ipb2 && ./Run.110D.min Segmentation fault (core dumped) ./Run.110D.min: Program error make[1]: [test.pbsa] Error 1 (ignored) cd pbsa_delphi && ./Run.1az6.min diffing mdout.1az6.min.save with mdout.1az6.min PASSED ============================================================== cd ambpdb && ./Run.ambpdb | New format PARM file being parsed. | Version = 1.000 Date = 02/19/04 Time = 15:33:29 diffing restrt.pdb.save with restrt.pdb PASSED ============================================================== cd ambpdb_first_protein && ./Run.ambpdb | New format PARM file being parsed. | Version = 1.000 Date = 02/15/07 Time = 16:57:28 diffing first.pdb.save with first.pdb PASSED ============================================================== cd ambpdb_first_rna && ./Run.ambpdb | New format PARM file being parsed. | Version = 1.000 Date = 05/18/06 Time = 18:52:52 diffing first.pdb.save with first.pdb PASSED ============================================================== cd elsize && ./Run.elsize diffing elsize_out.trxox.save with elsize_out.trxox PASSED ============================================================== cd ./chamber/trans-but-2-ene && ./Run /bin/rm: No match. diffing chamber.out.save with chamber.out PASSED ============================================================== diffing prmtop.save with prmtop PASSED ============================================================== diffing inpcrd.save with inpcrd PASSED ============================================================== cd ./chamber/ala_ala_ala && ./Run /bin/rm: No match. diffing chamber.out.save with chamber.out PASSED ============================================================== diffing prmtop.save with prmtop PASSED ============================================================== diffing inpcrd.save with inpcrd PASSED ============================================================== cd ./chamber/poly_pro_gas && ./Run.poly_pro_gas_chamber diffing chamber.crd.out.save with chamber.crd.out PASSED ============================================================== diffing poly_pro_gas_all22.crd.prmtop.save with poly_pro_gas_all22.crd.prmtop PASSED ============================================================== diffing poly_pro_gas_all22.crd.inpcrd.save with poly_pro_gas_all22.crd.inpcrd PASSED ============================================================== diffing chamber.pdb.out.save with chamber.pdb.out PASSED ============================================================== diffing poly_pro_gas_all22.pdb.prmtop.save with poly_pro_gas_all22.pdb.prmtop PASSED ============================================================== diffing poly_pro_gas_all22.pdb.inpcrd.save with poly_pro_gas_all22.pdb.inpcrd PASSED ============================================================== cd ./chamber/glucose && ./Run /bin/rm: No match. diffing chamber.out.save with chamber.out PASSED ============================================================== diffing prmtop.save with prmtop PASSED ============================================================== diffing inpcrd.save with inpcrd PASSED ============================================================== cd ./chamber/dhfr_gas && ./Run.dhfr_gas_chamber diffing chamber.out.save with chamber.out PASSED ============================================================== diffing dhfr_gas_all22_prot.prmtop.save with dhfr_gas_all22_prot.prmtop PASSED ============================================================== diffing dhfr_gas_all22_prot.inpcrd.save with dhfr_gas_all22_prot.inpcrd PASSED ============================================================== cd ./chamber/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_chamber /bin/rm: No match. diffing chamber.out.save with chamber.out PASSED ============================================================== diffing prmtop.save with prmtop PASSED ============================================================== diffing inpcrd.save with inpcrd PASSED ============================================================== cd ./sqm/c2h2 && ./Run diffing c2h2.pm3.sp.out.save with c2h2.pm3.sp.out PASSED ============================================================== diffing c2h2.pm6.sp.out.save with c2h2.pm6.sp.out PASSED ============================================================== diffing c2h2.pm3.go.out.save with c2h2.pm3.go.out PASSED ============================================================== diffing c2h2.pm6.go.out.save with c2h2.pm6.go.out PASSED ============================================================== cd ./sqm/ch3f && ./Run diffing ch3f.pm3.sp.out.save with ch3f.pm3.sp.out PASSED ============================================================== diffing ch3f.pm6.sp.out.save with ch3f.pm6.sp.out PASSED ============================================================== diffing ch3f.pm3.go.out.save with ch3f.pm3.go.out PASSED ============================================================== diffing ch3f.pm6.go.out.save with ch3f.pm6.go.out PASSED ============================================================== cd ./sqm/nma && ./Run diffing nma.pm3.sp.out.save with nma.pm3.sp.out PASSED ============================================================== diffing nma.pm6.sp.out.save with nma.pm6.sp.out PASSED ============================================================== diffing nma.pm3.go.out.save with nma.pm3.go.out PASSED ============================================================== diffing nma.pm6.go.out.save with nma.pm6.go.out PASSED ============================================================== cd ./rism1d/spc && ./Run.spc cat: spc.xvv: No such file or directory diffing spc.xvv.save with spc.xvv file ddtmp.spc.xvv is short PASSED /bin/rm: cannot remove `spc.xvv': No such file or directory ============================================================== cd ./rism1d/spc && ./Run.spc-nacl cat: spc-nacl.xvv: No such file or directory diffing spc-nacl.xvv.save with spc-nacl.xvv file ddtmp.spc-nacl.xvv is short PASSED /bin/rm: cannot remove `spc-nacl.xvv': No such file or directory ============================================================== cd ./rism1d/tip3p && ./Run.tip3p cat: tip3p.xvv: No such file or directory diffing tip3p.xvv.save with tip3p.xvv file ddtmp.tip3p.xvv is short PASSED /bin/rm: cannot remove `tip3p.xvv': No such file or directory ============================================================== cd ./rism1d/tip3p && ./Run.tip3p-nacl cat: tip3p-nacl.xvv: No such file or directory diffing tip3p-nacl.xvv.save with tip3p-nacl.xvv file ddtmp.tip3p-nacl.xvv is short PASSED /bin/rm: cannot remove `tip3p-nacl.xvv': No such file or directory ============================================================== Finished test suite for AmberTools at Tue May 18 18:17:36 EEST 2010. make[1]: Target `test.serial' not remade because of errors. make[1]: Leaving directory `/opt/amber11/AmberTools/test' 195 file comparisons passed 0 file comparisons failed 74 tests experienced errors Test log file saved as logs/test_at_serial/2010-05-18_18-08-30.log No test diffs to save!