Re: [AMBER] AT1.4 installation errors (logs are attached)

From: David A. Case <case.biomaps.rutgers.edu>
Date: Tue, 18 May 2010 23:09:02 -0400

On Tue, May 18, 2010, Dmitry Mukha wrote:
>
> I've try to set up AmberTools 1.4 at Fedora 12

> >
> > ./Run.asp: line 8: 2409 Segmentation fault (core dumped) (
> > $DO_PARALLEL ./asp > asp.out.tmp )
> > ./Run.asp: Program error
> > make[2]: *** [asp_test] Error 1
> > Running test to compute non-GB Newton-Raphson and normal modes:
> >
> > ./Run.aspnb: line 8: 2425 Segmentation fault (core dumped)
> > $DO_PARALLEL ./aspnb > aspnb.out.tmp
> > ./Run.aspnb: Program error
> > make[2]: *** [aspnb_test] Error 1

> > *gcc -v*
> > Thread model: posix
> > gcc version 4.4.3 20100127 (Red Hat 4.4.3-4) (GCC)

Problems with Fedora Core 12 and this particular version of gcc have been
reported here before. So far, there has not been any overlap between people
who have this setup, and those who are willing or able to debug the problem.
I'm hoping that will change soon.

>
> ATs1.2 work fine.

This is actually quite an interesting fact....thanks for the
observation.

....dac


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Received on Tue May 18 2010 - 20:30:03 PDT
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