Re: [AMBER] sander.MPI problem

From: Dmitry Mukha <dvmukha.gmail.com>
Date: Sat, 22 May 2010 17:49:13 +0300

2010/5/21 peker milas <pekermilas.gmail.com>

> One more thing i forgot to tell. Again after mpich2 installation from
> repos, you may want to create a new folder and you can create symbolic
> links of /usr/include, /usr/bin and, /usr/lib into that folder. Then
> you can set this folder as $MPI_HOME. Because otherwise amber may not
> be able to find those libmpich.a and mpif.h (or other related files).
>
> best
> peker
>

That bug isn't Karmic Koala issue [because I use Fedora and I saw it too]. I
solved the problem by recompiling OpenMPI with compat-gcc (v3.4) using this
flags
CC="gcc34" CXX="g++34"
for configuring script.

-- 
Sincerely,
Dmitry Mukha
Institute of Bioorganic Chemistry NAS, Minsk, Belarus
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Received on Sat May 22 2010 - 08:00:03 PDT
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