Re: [AMBER] AT1.4 installation errors (logs are attached)

From: Mengjuei Hsieh <mjhsieh.gmail.com>
Date: Sat, 22 May 2010 13:17:32 -0700

On Sat, May 22, 2010 at 10:45 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> Memory allocation would be suspect here; possibly not enough
> memory is being allocated?
> A memory debug tool like Purify or Electric Fence could come in handy here.

I haven't tried IBM Purify yet, but DUMA (an eFence spinoff) gave me a
heisenbug...

Cheers, 
-- 
Mengjuei
[mjhsieh.Fedora64 duma_2_5_15]$ /home/mjhsieh/amber11/bin/teLeap
-I/home/mjhsieh/amber11/dat/leap/lib -f ../test.leap
-I: Adding /home/mjhsieh/amber11/dat/leap/lib to search path.
-f: Source ../test.leap.
Welcome to LEaP!
(no leaprc in search path)
Sourcing: ../test.leap
Loading library: /home/mjhsieh/amber11/dat/leap/lib/all_nucleic94.lib
Segmentation fault (core dumped)
[mjhsieh.Fedora64 duma_2_5_15]$ ./duma.sh
/home/mjhsieh/amber11/bin/teLeap -I/home/mjhsieh/amber11/dat/leap/lib
-f ../test.leap
DUMA 2.5.15 (shared library, NO_LEAKDETECTION)
Copyright (C) 2006 Michael Eddington <meddington.gmail.com>
Copyright (C) 2002-2008 Hayati Ayguen <h_ayguen.web.de>, Procitec GmbH
Copyright (C) 1987-1999 Bruce Perens <bruce.perens.com>
-I: Adding /home/mjhsieh/amber11/dat/leap/lib to search path.
-f: Source ../test.leap.
Welcome to LEaP!
(no leaprc in search path)
Sourcing: ../test.leap
Loading library: /home/mjhsieh/amber11/dat/leap/lib/all_nucleic94.lib
> desc RAN
UNIT name: RAN
Head atom: null
Tail atom: null
Contents:
R<RAN 1>
> quit
	Quit
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Received on Sat May 22 2010 - 13:30:03 PDT
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