Re: [AMBER] How to run xleap with PC, when amber10 was installed remoted in supercomputer?

From: Jason Swails <jason.swails.gmail.com>
Date: Fri, 7 May 2010 08:49:29 -0400

Hello,

On Fri, May 7, 2010 at 6:13 AM, Sushil Mishra <sushilbioinfo.gmail.com>wrote:

> try ssh -X to connect from remote machine. It will work fine, using
> graphics
> in this way is not a very good idea but it will work.
>
> ....S
>

This advice will work just fine for windows (ssh -Y will give better
performance, I believe, because it fakes the authentication). However, it
will only work if you have access to an xterm or if your client says it can
operate with x-forwarding. Cygwin, for instance, can do this (and you can
also install amber on cygwin -- see the amber website for instructions).

If you do not have access to an xterm, then you'll have to settle with
non-graphical tleap or sleap.

All the best,
Jason


>
> 2010/5/7 Catein Catherine <askamber23.hotmail.com>
>
> >
> > Dear All,
> >
> >
> >
> > I am running AMBER in the supercomputer of the campus. As I have no
> linux
> > workstations in front of me. I try to call up xleap remotely thr' my PC
> > notebook (with window XP, and no amber installed).
> >
> >
> >
> > I typed following commands on remote PC (telnet window).
> >
> >
> >
> > "/amber10/exe/xleap -s -f /amber10/dat/leap/cmd/leaprc.ff99SB"
> >
> >
> >
> > However, the following error message appears.
> >
> >
> >
> > "_X11TransSocketINETConnect () can't get address for Mycompouter:6000:
> Name
> > or Service not known
> >
> >
> >
> > Error: Can't open display: Mycomputer:0.0"
> >
> >
> >
> > What should I do to solve this problem, as I have difficulty to get a
> linux
> > workstation nearby, I can only access the supercomputer, but I cannot
> > generate the input files now. What should I do?
> >
> >
> >
> > Many thanks in advance for your help.
> >
> >
> >
> > Best regards,
> >
> > Cat
> >
> >
> >
> >
> >
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-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri May 07 2010 - 06:00:26 PDT
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