[AMBER] How to obtain interdomain angles

From: Tan Yaw Sing <tanys.bii.a-star.edu.sg>
Date: Tue, 18 May 2010 14:30:38 +0800

Hi Amber users,

I have a trajectory of a protein with two domains and I am trying to
characterise its interdomain motions. I would like to obtain the angle
of rotation between the two domains during the course of the
trajectory. Is there a way to perform this kind of analysis in ptraj?
Thank you for your help.

Regards,
Yaw Sing
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 18 2010 - 00:00:03 PDT
Custom Search