Still not clear, you mean
http://gcc.gnu.org/wiki/GFortranBinaries ?
Anyway, apple gcc (/usr/bin/gcc) is the *only* gcc you have so it won't work
to compile AmberTools. The reason is that apple gcc has no libs for fortran,
see, form my system:
1)
which gcc; gcc -v
/usr/bin/gcc
Using built-in specs.
Target: i686-apple-darwin10
Configured with: /var/tmp/gcc/gcc-5659~1/src/configure --disable-checking
--enable-werror --prefix=/usr --mandir=/share/man
--enable-languages=c,objc,c++,obj-c++
--program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib
--build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10-
--host=x86_64-apple-darwin10 --target=i686-apple-darwin10
--with-gxx-include-dir=/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Apple Inc. build 5659)
2)
which gcc-4; gcc-4 -v
/sw/bin/gcc-4
Using built-in specs.
Target: x86_64-apple-darwin10
Configured with: ../gcc-4.4.2/configure --prefix=/sw --prefix=/sw/lib/gcc4.4
--mandir=/sw/share/man --infodir=/sw/share/info
--enable-languages=c,c++,fortran,objc,java --with-gmp=/sw
--with-libiconv-prefix=/sw --with-ppl=/sw --with-cloog=/sw
--with-system-zlib --x-includes=/usr/X11R6/include
--x-libraries=/usr/X11R6/lib --disable-libjava-multilib
--build=x86_64-apple-darwin10 --host=x86_64-apple-darwin10
--target=x86_64-apple-darwin10
Thread model: posix
gcc version 4.4.2 (GCC)
In (1) one has: enable-languages=c,objc,c++,obj-c++
In (2) one has: enable-languages=c,c++,fortran,objc,java
Did you see the diff?
So, if you using apple gcc with whatever fortran you undoubtedly will
have "Unable
to compile mixed C/Fortran code".
You need a gcc that supports gfortran.
I use Fink to sort out this problem. Many here use MacPorts. Maybe there are
other solutions, but I am not aware.
Alan
On Fri, May 14, 2010 at 13:43, erik zuiderweg <zuiderwe.umich.edu> wrote:
> gfortran, the one coming with the gnu package
>
> On May 13, 2010, at 6:04 PM, Alan wrote:
>
> So the question here is which gfortran are you using? Fink? MacPorts?
>> Anything else?
>>
>> From your economical description of the problem I would assume you're
>>> using
>>>
>> gfortran from Fink and you are not aware of /sw/bin/gcc-4 (Fink gcc) and
>> /usr/bin/gcc (Apple gcc) to gcc-4, since it seems you're mixing
>> /usr/bin/gcc
>> with gfortran.
>>
>> See
>>
>> http://archive.ambermd.org/201004/0600.html
>> http://archive.ambermd.org/201004/0607.html
>>
>> Alan
>>
>> On Thu, May 13, 2010 at 22:20, erik zuiderweg <zuiderwe.umich.edu> wrote:
>>
>> yes
>>>
>>>
>>>
>>> On May 13, 2010, at 5:12 PM, David Watson wrote:
>>>
>>> Are you using
>>>
>>>> configure -macAccelerate gnu
>>>> to configure AT1.4?
>>>>
>>>> On May 13, 2010, at 3:52 PM, erik zuiderweg wrote:
>>>>
>>>> I am trying to install Ambertools1.4 on a Intel MacbookPro , running Os
>>>>
>>>>> 10.6.
>>>>> using the bash shell
>>>>>
>>>>> I have the gnu compilers installed.
>>>>>
>>>>> The configuration file is failing, WARNING: Unable to compile mixed
>>>>> C/Fortran code. (see attached log)
>>>>>
>>>>> The installation is failing because of a missing
>>>>> /usr/local/amber11/lib/arpack.a file
>>>>>
>>>>> (see attached
>>>>> log)<Ambertools_configure_problems.txt><Ambertools_make_problems.txt>
>>>>>
>>>>> Please help!_______________________________________________
>>>>> AMBER mailing list
>>>>> AMBER.ambermd.org
>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>>>
>>>>
>>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>>
>>
>>
>> --
>> Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
>> Department of Biochemistry, University of Cambridge.
>> 80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>
>>> http://www.bio.cam.ac.uk/~awd28<<
>>>>
>>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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Received on Fri May 14 2010 - 06:30:06 PDT
