You may also want to install the latest developer tools, if you didn't do that after your upgrade.
On May 14, 2010, at 11:22 AM, erik zuiderweg wrote:
> Thanks!
>
>
> On May 14, 2010, at 11:41 AM, Jason Swails wrote:
>
>> On Fri, May 14, 2010 at 11:23 AM, erik zuiderweg <zuiderwe.umich.edu> wrote:
>>
>>> Thanks.
>>>
>>> This is what I get when entering these commands.
>>>
>>> [users-macbook-pro:~] erikzuiderweg% gcc -v
>>>
>>> Using built-in specs.
>>> Target: i686-apple-darwin10
>>> Configured with: /var/tmp/gcc/gcc-5646~6/src/configure --disable-checking
>>> --enab
>>>
>>> le-werror --prefix=/usr --mandir=/share/man
>>> --enable-languages=c,objc,c++,obj-c+
>>> + --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib
>>> --bui
>>> ld=i686-apple-darwin10 --with-gxx-include-dir=/include/c++/4.2.1
>>> --program-prefi
>>>
>>> x=i686-apple-darwin10- --host=x86_64-apple-darwin10
>>> --target=i686-apple-darwin10
>>> Thread model: posix
>>> gcc version 4.2.1 (Apple Inc. build 5646)[users-macbook-pro:~]
>>>
>>>
>>> erikzuiderweg% gfortran -v
>>> Using built-in specs.
>>> Target: i386-apple-darwin9.7.0
>>> Configured with: ./configure --enable-languages=fortran
>>> Thread model: posix
>>> gcc version 4.4.1 20090623 (prerelease) (GCC)
>>>
>>>
>>>
>>>
>>>
>>> Note: I did upgrade to OS10.6 AFTER I installed the compilers -- maybe that
>>> is the issue..
>>>
>>
>> You upgraded to 10.6 after you installed the compilers? This could likely
>> be an issue, as the OS received a makeover and is quite different than past
>> versions (i.e., 64-bit support). I would remove the versions installed
>> under Leopard and re-install gcc/gfortran from macports (or fink, but I
>> typically use macports). Again, Mengjuei's blog (amberonmac) is a good
>> step-by-step walkthrough of how to successfully run amber/ambertools on
>> mac. Installing Amber on the mac is painless... the painful part is setting
>> up the compilers so that it becomes painless :).
>>
>> Good luck!
>> Jason
>>
>>
>>>
>>>
>>>
>>>
>>>
>>> On May 13, 2010, at 6:58 PM, Mengjuei Hsieh wrote:
>>>
>>> On Thu, May 13, 2010 at 1:52 PM, erik zuiderweg <zuiderwe.umich.edu>
>>>> wrote:
>>>>
>>>>> I am trying to install Ambertools1.4 on a Intel MacbookPro , running Os
>>>>> 10.6.
>>>>> using the bash shell
>>>>> I have the gnu compilers installed.
>>>>>
>>>>> The configuration file is failing, WARNING: Unable to compile mixed
>>>>> C/Fortran code. (see attached log)
>>>>>
>>>>> The installation is failing because of a missing
>>>>> /usr/local/amber11/lib/arpack.a file
>>>>>
>>>>
>>>> Dear Erik,
>>>>
>>>> The later errors on arpack: "make[1]: Nothing to be done for
>>>> `install'." is probably due to the fact your configure script didn't
>>>> finish successfully. So we should focus on the fact your gfortran
>>>> seems to be not working.
>>>>
>>>> We can start from the versions of your c and fortran compilers to
>>>> solve the issues. You can use these two commands to get those
>>>> information: "gcc -v" and "gfortran -v". It also will be very helpful
>>>> if you can tell us what did you do to install the fortran compiler.
>>>>
>>>> Best,
>>>> --
>>>> Mengjuei
>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>>>
>>>>
>>>
>>> _______________________________________________
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>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>>
>>
>> --
>> Jason M. Swails
>> Quantum Theory Project,
>> University of Florida
>> Ph.D. Graduate Student
>> 352-392-4032
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>
>
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Received on Fri May 14 2010 - 10:00:03 PDT
