You can delete protein part and if u dont want to delete then also no
problem, as this will only give H bond that are present in ur structure.
On Sat, May 15, 2010 at 12:55 PM, Asfa Ali <asfa.iisc.gmail.com> wrote:
> Hi,
>
> My system is only DNA, so is this part of the script required ?
>
> #-- Backbone donors and acceptors for this particular molecule
> # N-H for prolines do not exist so are not in the mask
> #
> donor mask .O
> acceptor mask :2-11,13-16,20.N :2-20.H
> #Terminal residues have different atom names
> donor mask .OXT
> acceptor mask :1.N :1.H1
> acceptor mask :1.N :1.H2
> acceptor mask :1.N :1.H3
>
> Thanks,
> Asfa.
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--
With best regards
Dr. Shamoon Ahmad Siddiqui
DBT Postdoctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science
Bangalore-560012, India
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Received on Sat May 15 2010 - 01:00:03 PDT
