On May 4, 2010, at 1:12 PM, Emily Curtis wrote:
> No, it isn't a directory. /Users/emily/amber11/amber11/ is a directory but
> the bin is not - do you know if it should be?
>
Yes, it should be.
$AMBERHOME/bin should be a directory containing everything that is "installed"
$AMBERHOME/exe should be a symbolic link to $AMBERHOME/bin
Here's my AT1.3 directory structure:
mycomputer:~ me$ ls -l /usr/local/amber11/
total 72
-rw-rw-r--. 1 502 staff 19521 Aug 31 2009 LICENSE_at
-rw-rw-r--. 1 502 staff 1105 Dec 19 11:16 README_at
drwxr-xr-x 3 root wheel 102 Feb 8 23:55 benchmarks
drwxr-xr-x 53 root wheel 1802 Feb 9 01:12 bin
drwxr-xr-x 19 root wheel 646 Feb 9 00:39 dat
drwxr-xr-x 4 root wheel 136 Feb 8 23:55 doc
drwxr-xr-x 6 root wheel 204 Feb 8 23:55 examples
lrwxr-xr-x 1 root wheel 3 Feb 8 23:59 exe -> bin
drwxr-xr-x 8 root wheel 272 Feb 9 00:43 include
drwxr-xr-x 9 root wheel 306 Feb 9 01:12 lib
-rw-r--r-- 1 root wheel 6129 Feb 9 01:11 netcdf_config.log
drwxr-xr-x 39 root wheel 1326 Feb 9 01:03 src
drwxr-xr-x 35 dewatson staff 1190 Feb 9 01:30 test
> On Tue, May 4, 2010 at 2:10 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>>> /bin/mv ambpdb elsize molsurf add_pdb resp
>> /Users/emily/amber11/amber11/bin
>>> usage: mv [-f | -i | -n] [-v] source target
>>> mv [-f | -i | -n] [-v] source ... directory
>>> make[1]: *** [install] Error 64
>>> make: *** [serial] Error 2
>>
>> Is /Users/emily/amber11/amber11/bin a directory?
>> Does you have write permission on it?
>>
>> Bill
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
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Received on Tue May 04 2010 - 11:30:08 PDT
