Hi Monica,
I would advise you to stop using nucgen and switch to nab (free, much more
powerful, convenient and part or AmberTools) to build nucleic acid
structures. I remeber nucgen to be brittle with respect to input format,
and limited in what it could do (No offense to the author, if he's still
around ;-) ).
Kind Regards,
Thomas
On Wed, May 26, 2010 7:18 am, monica.imtech.res.in wrote:
> hi all
>
> can anyone tell me what is the format of writing for arnott B-DNA
> structure
> information as i'm getting error of
>
> NUC 1
>
> MOLECULE 1 CONTAINS 16 RESIDUES:
>
> A5 T T A A G A A C T G A
> A T A T
> NUC 2
>
> MOLECULE 2 CONTAINS 16 RESIDUES:
>
> A5 A A A G C C G C T T A
> C C A A
> Unknown residue: T
> Unknown residue: A
> Unknown residue: A
> Unknown residue: A(contd.)
>
> RESIDUE NAMES ARE NOT UNIFORMLY OLD OR 1994 NUCLEIC ACIDS
>
>
> i'm attaching the input file also.
>
> thanx
> monica
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>
Dr. Thomas Steinbrecher
BioMaps Institute
Rutgers University
610 Taylor Rd.
Piscataway, NJ 08854
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Received on Wed May 26 2010 - 05:00:05 PDT
