Dear Asfa
Just add donar and acceptor atoms in ptraj script and follow the same
tutorial. I am sending u one ptraj script for my protein dna complex, modify
it according to ur need.
On Sat, May 15, 2010 at 11:00 AM, Asfa Ali <asfa.iisc.gmail.com> wrote:
> Hi,
>
> The tutorial http://ambermd.org/tutorials/basic/tutorial3 gives the
> instruction for H-bond & dihedral angle calculation for proteins. Is there
> any tutorial or specific instuctions for the same calculation for DNA.
>
> Kindly help.
>
> Thanks,
> Asfa.
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--
With best regards
Dr. Shamoon Ahmad Siddiqui
DBT Postdoctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science
Bangalore-560012, India
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Received on Fri May 14 2010 - 23:00:04 PDT
