> Yes I used "image familiar" while re imaging the coordinates using
> ptraj. I took the screen shot to give just an idea of
> how the system looks after equilibration.
It looks completely 'flat' on the bottom edge - did you trim
the image?
Probably less NVT would make for less vacuum bubble and easier
NPT equilibration.
Bill
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Received on Mon May 17 2010 - 16:30:03 PDT
