Amber Archive Sep 2011 by thread
- Re: [AMBER] problem in installing xleap sonali dhindwal (Wed Aug 31 2011 - 21:38:20 PDT)
- [AMBER] cpptraj-segmentation fault Praapti Jayaswal (Wed Aug 31 2011 - 23:02:24 PDT)
- [AMBER] CCA-Phe terminal using Antechamber Sindrila Dutta banik (Thu Sep 01 2011 - 05:39:46 PDT)
- Re: [AMBER] Non-periodic behavior of NMR restraints upon restart in a periodic system Keith Yarem (Thu Sep 01 2011 - 11:23:03 PDT)
- [AMBER] PTRAJ strange behavior peker milas (Thu Sep 01 2011 - 12:39:38 PDT)
- [AMBER] Energy change KIRTANA S (Thu Sep 01 2011 - 13:09:19 PDT)
- [AMBER] solvateBox Ismail, Mohd F. (Thu Sep 01 2011 - 14:18:12 PDT)
- [AMBER] Non standard residue parameterization madhumita das (Fri Sep 02 2011 - 03:20:19 PDT)
- [AMBER] Energy of solute molecule Mattei, Alessandra (Fri Sep 02 2011 - 10:31:35 PDT)
- [AMBER] Run Amber on a system with multiple GPUs peter.stauffert.boehringer-ingelheim.com (Fri Sep 02 2011 - 10:55:35 PDT)
- [AMBER] some questions on GAFF su He (Fri Sep 02 2011 - 12:58:06 PDT)
- [AMBER] SHAKE error help tsurma.umich.edu (Fri Sep 02 2011 - 19:28:08 PDT)
- [AMBER] antechamber error Soonmin Jang (Sat Sep 03 2011 - 01:45:47 PDT)
- [AMBER] MM_PBSA triple trajectory approch Sangita Kachhap (Sat Sep 03 2011 - 05:00:33 PDT)
- [AMBER] Amber tools KIRTANA S (Sat Sep 03 2011 - 22:05:35 PDT)
- [AMBER] NAB Module compilation error cpp failed Rajesh Raju (Mon Sep 05 2011 - 10:49:53 PDT)
- [AMBER] NAB Module compilation error cpp failed Rajesh Raju (Mon Sep 05 2011 - 10:36:00 PDT)
- [AMBER] Energy kirtana S (Mon Sep 05 2011 - 11:56:34 PDT)
- [AMBER] MMPBSA Ala scan error Jesper Sørensen (Sun Sep 04 2011 - 23:41:04 PDT)
- [AMBER] replace unit in leap tsurma.umich.edu (Sun Sep 04 2011 - 09:59:45 PDT)
- [AMBER] replace unit in leap tsurma.umich.edu (Sun Sep 04 2011 - 10:56:05 PDT)
- [AMBER] Sleap : amoeba and gaff Guenegou, Guillaume [JRDFR] (Mon Sep 05 2011 - 05:10:45 PDT)
- [AMBER] problem while using Antechamber sonali dhindwal (Mon Sep 05 2011 - 07:21:24 PDT)
- Re: [AMBER] how to fill in missing parameters in tleap? Yun Shi (Mon Sep 05 2011 - 16:22:19 PDT)
- [AMBER] velocity modification in PMEMD, CUDA version Chen, Changjun (Mon Sep 05 2011 - 19:29:29 PDT)
- [AMBER] antechamber am1bcc stops with no error message Danny Xu (Mon Sep 05 2011 - 21:37:38 PDT)
- [AMBER] Creating prmtop and inpcrd files Chidambar Kulkarni (Mon Sep 05 2011 - 23:57:53 PDT)
- [AMBER] Is there any module which can calculate interaction energy, as ANAL in Amber 8? wrong string (Tue Sep 06 2011 - 01:09:06 PDT)
- [AMBER] problem with MM-PBSA Maryam Hamzehee (Tue Sep 06 2011 - 01:55:41 PDT)
- [AMBER] hydrogen boding and PBC Vijay Manickam Achari (Tue Sep 06 2011 - 03:19:02 PDT)
- [AMBER] Amber for GPUs Baker D.J. (Tue Sep 06 2011 - 05:06:42 PDT)
- [AMBER] How to Generate Structure with Correct Valence for an Unnatural Amino Acid in Position 1 George A. Khoury (Tue Sep 06 2011 - 07:00:43 PDT)
- [AMBER] mbondi3 Peter Varnai (Tue Sep 06 2011 - 10:56:31 PDT)
- [AMBER] moment of inertia John S (Tue Sep 06 2011 - 11:27:40 PDT)
- [AMBER] umbrella sampling with amber10 Qian Wang (Tue Sep 06 2011 - 13:42:28 PDT)
- [AMBER] results from independent simulations Wu Xu (Tue Sep 06 2011 - 17:37:25 PDT)
- [AMBER] Some question regarding force field for periodic system jun kit (Tue Sep 06 2011 - 21:24:02 PDT)
- Re: [AMBER] again GLYCAM06 + 99SB + GAFF ? Yun Shi (Tue Sep 06 2011 - 22:28:44 PDT)
- [AMBER] Minimum distance RANAJIT SHINDE (Wed Sep 07 2011 - 00:00:24 PDT)
- [AMBER] Residence time aiswarya pawar (Wed Sep 07 2011 - 00:14:18 PDT)
- [AMBER] Restrain of atoms during MD simulation Sindrila Dutta banik (Wed Sep 07 2011 - 00:37:16 PDT)
- [AMBER] libmkl_ia32.a missing from MKL em64t Aaron Greenwood (Wed Sep 07 2011 - 09:57:33 PDT)
- [AMBER] Proble related to correlation function Sindrila Dutta banik (Wed Sep 07 2011 - 10:51:17 PDT)
- [AMBER] Format conversion aiswarya.pawar.gmail.com (Wed Sep 07 2011 - 11:18:12 PDT)
- [AMBER] false positive on too large QM region? Brian Radak (Wed Sep 07 2011 - 14:37:58 PDT)
- [AMBER] MPI version of MMPBSA Siavoush Dastmalchi (Thu Sep 08 2011 - 00:35:59 PDT)
- [AMBER] Hydrogen Bonding Sara Ahmadi (Thu Sep 08 2011 - 04:22:34 PDT)
- [AMBER] Parameters for Boron containing molecules gal.fradin.live.biu.ac.il (Thu Sep 08 2011 - 05:08:16 PDT)
- [AMBER] Fwd: false positive on too large QM region? Brian Radak (Thu Sep 08 2011 - 07:42:56 PDT)
- [AMBER] Water density/potential visualization Abhishek Mukhopadhyay (Thu Sep 08 2011 - 09:56:54 PDT)
- [AMBER] turning on 1-2 and 1-3 interactions Steven Burger (Thu Sep 08 2011 - 10:46:26 PDT)
- [AMBER] intermolecular interaction su He (Thu Sep 08 2011 - 13:02:17 PDT)
- Re: [AMBER] PBS script Bruno Rodrigues (Thu Sep 08 2011 - 21:36:12 PDT)
- Re: [AMBER] How to interpret GLYCAM prep file? Yun Shi (Thu Sep 08 2011 - 23:38:15 PDT)
- [AMBER] SMD: restraints on the pulled apart interacting proteins Sergey Samsonov (Fri Sep 09 2011 - 07:39:36 PDT)
- [AMBER] problems with prmtops & MMGBSA Irene Newhouse (Fri Sep 09 2011 - 18:05:58 PDT)
- [AMBER] the result of pseudorotation angle clwg (Sat Sep 10 2011 - 01:31:08 PDT)
- [AMBER] residue list kirtana S (Sun Sep 11 2011 - 19:40:52 PDT)
- [AMBER] vlimit exeeding problem Aparna P (Sun Sep 11 2011 - 23:46:33 PDT)
- [AMBER] QM-MM atoms input Shruti Koulgi (Mon Sep 12 2011 - 04:00:58 PDT)
- [AMBER] Aromatic bonds disappear during sdf creation with sleap Guenegou, Guillaume [JRDFR] (Mon Sep 12 2011 - 05:10:29 PDT)
- [AMBER] ptraj clustering George Tzotzos (Mon Sep 12 2011 - 08:02:40 PDT)
- [AMBER] pbsa kirtana S (Mon Sep 12 2011 - 08:56:44 PDT)
- [AMBER] Amber 11 configure error with openmpi Lianhu Wei (Mon Sep 12 2011 - 10:14:33 PDT)
- [AMBER] Residue transformation Fabrício Bracht (Mon Sep 12 2011 - 15:10:10 PDT)
- [AMBER] error using saveamberparm on pdb with nonstandard residues Darren Jindal (Mon Sep 12 2011 - 19:32:18 PDT)
- [AMBER] Parameters from Jaguar output Kshatresh Dutta Dubey (Mon Sep 12 2011 - 22:09:29 PDT)
- [AMBER] visualization of secstruc with e.g. gnuplot Nadine Utz (Tue Sep 13 2011 - 04:07:16 PDT)
- [AMBER] Problem with mmpbsa Devlina Chakravarty (Tue Sep 13 2011 - 05:33:33 PDT)
- [AMBER] undefined reference Lars Skjærven (Tue Sep 13 2011 - 05:48:56 PDT)
- [AMBER] Fwd: amber Gustavo Seabra (Tue Sep 13 2011 - 06:59:55 PDT)
- [AMBER] Global Minimum in Simulated Annealing using SANDER Julian Zachmann (Tue Sep 13 2011 - 07:12:00 PDT)
- [AMBER] October 20 deadline for ACS COMP division awards for junior faculty and graduate students Carlos Simmerling (Tue Sep 13 2011 - 10:46:56 PDT)
- [AMBER] Compiling Amber11 on Blue Gene/P Garo Garabedyan (Tue Sep 13 2011 - 12:45:37 PDT)
- [AMBER] Run amber on Cluster Lianhu Wei (Tue Sep 13 2011 - 12:46:17 PDT)
- [AMBER] MMGBSA binding free energy shows large change with saltcon parameter, but not for MMPBSA binding free energy value Rajesh Raju (Tue Sep 13 2011 - 16:48:12 PDT)
- [AMBER] TI and MM-GBSA results manikanthan bhavaraju (Tue Sep 13 2011 - 17:33:06 PDT)
- [AMBER] AMBER Shesh Nath (Wed Sep 14 2011 - 00:00:24 PDT)
- [AMBER] Error in computing entropy! problem with number of frames in NMODE hongphuc nguyen (Wed Sep 14 2011 - 02:50:58 PDT)
- Re: [AMBER] How to avoid Zn parametrization? Andrew Voronkov (Wed Sep 14 2011 - 03:18:08 PDT)
- [AMBER] Running amber v11 over multiple gpus/nodes Baker D.J. (Wed Sep 14 2011 - 04:14:25 PDT)
- [AMBER] hello Linda catherine (Wed Sep 14 2011 - 05:16:27 PDT)
- [AMBER] pulling DNA amir abbasi (Wed Sep 14 2011 - 05:38:39 PDT)
- [AMBER] Need Help! (TMD - NSCM - IWRAP reg!) Fredrick Devadoss (Wed Sep 14 2011 - 06:51:22 PDT)
- [AMBER] energy kirtana S (Wed Sep 14 2011 - 08:02:14 PDT)
- [AMBER] attachment for my previous mail Fredrick Devadoss (Wed Sep 14 2011 - 07:00:38 PDT)
- [AMBER] benchmarking Tesla S2050 1U system Sidney Elmer (Wed Sep 14 2011 - 11:52:38 PDT)
- [AMBER] Bond command using xleap or tleap Fabrício Bracht (Wed Sep 14 2011 - 12:53:09 PDT)
- [AMBER] about Glycam_06g.dat and thiol-glycosidic linkage Yun Shi (Wed Sep 14 2011 - 15:53:43 PDT)
- [AMBER] inpcrd file fatahiya (Tue Sep 13 2011 - 23:47:04 PDT)
- [AMBER] Electrpostatic interaction vs Coulombic interaction Rilei Yu (Wed Sep 14 2011 - 17:48:08 PDT)
- [AMBER] MMPBSA.py 3DRISM error Jesper Soerensen (Wed Sep 14 2011 - 18:52:49 PDT)
- [AMBER] help ! zinc parameters Kk Zhu (Wed Sep 14 2011 - 19:48:36 PDT)
- [AMBER] Print Dipole Moment in Centriod MD Wei Lin (Wed Sep 14 2011 - 20:56:20 PDT)
- [AMBER] tleap command "set default Dielectric constant" not valid? Yongmei Wang (ywang) (Wed Sep 14 2011 - 21:33:29 PDT)
- [AMBER] AMOEBA potentials Neha Gandhi (Thu Sep 15 2011 - 02:43:14 PDT)
- [AMBER] MMPBSA.py energy decomposition inconsistencies Antje Wolf (Thu Sep 15 2011 - 05:13:17 PDT)
- [AMBER] X-PLOR formatted .psf in CHAMBER Marc van der Kamp (Thu Sep 15 2011 - 05:19:29 PDT)
- [AMBER] radial distribution function Massimiliano Porrini (Thu Sep 15 2011 - 05:27:03 PDT)
- [AMBER] Dihedral parameters Chidambar Kulkarni (Thu Sep 15 2011 - 07:14:55 PDT)
- [AMBER] Effect of SLI for Amber GPU calculations - AMD Bulldozers ? Marek Maly (Thu Sep 15 2011 - 09:52:13 PDT)
- [AMBER] help ! zinc parameters Kk Zhu (Thu Sep 15 2011 - 23:46:06 PDT)
- [AMBER] Grid Aparna P (Fri Sep 16 2011 - 01:27:00 PDT)
- [AMBER] FATAL: allocation failure in vector(), please help me to fix that problem hongphuc nguyen (Fri Sep 16 2011 - 01:26:55 PDT)
- [AMBER] Problems with parsing .PSF files by ptraj Marc van der Kamp (Fri Sep 16 2011 - 03:14:02 PDT)
- [AMBER] Initial plateau of the radial distribution function Massimiliano Porrini (Fri Sep 16 2011 - 03:16:23 PDT)
- [AMBER] ptraj Linda catherine (Fri Sep 16 2011 - 06:03:14 PDT)
- [AMBER] How to start with aiswarya.pawar.gmail.com (Fri Sep 16 2011 - 06:19:24 PDT)
- [AMBER] help!!zinc parameters zhukk (Fri Sep 16 2011 - 08:16:17 PDT)
- [AMBER] unsubscribe Yongmei Wang (ywang) (Fri Sep 16 2011 - 09:48:03 PDT)
- [AMBER] Radial distribution kirtana S (Fri Sep 16 2011 - 10:09:19 PDT)
- [AMBER] AMBER expense David Condon (Fri Sep 16 2011 - 13:24:23 PDT)
- [AMBER] How to mutate nucleobases Rajesh Raju (Fri Sep 16 2011 - 13:42:13 PDT)
- [AMBER] Difference between serial and parallel MMPBSA Osman, Roman (Fri Sep 16 2011 - 15:18:41 PDT)
- [AMBER] Problem with pme cuda :launching kernel kPMEGetGridWeights Himanshu Joshi (Fri Sep 16 2011 - 23:24:49 PDT)
- [AMBER] Dihedral Rotation David Condon (Sat Sep 17 2011 - 12:27:11 PDT)
- [AMBER] Serious error (or bug) with free energy decomposition MMPBSA.py..The binding free energy values differs in decomposition analysis.. Rajesh Raju (Sat Sep 17 2011 - 13:43:31 PDT)
- [AMBER] scaling factors in carbohydrate-protein interaction Yun Shi (Sat Sep 17 2011 - 15:43:52 PDT)
- [AMBER] rst or mdcrd file to view the structures? Chinh Su Tran To (Sun Sep 18 2011 - 22:34:54 PDT)
- [AMBER] Glycam06g and ff99SB cause the difference of DIHED (not attributed to the scaling factor) d944286.oz.nthu.edu.tw (Sun Sep 18 2011 - 22:50:38 PDT)
- [AMBER] ptraj: problem with distance and multi-atom masks Marc van der Kamp (Mon Sep 19 2011 - 02:32:47 PDT)
- [AMBER] help! zinc parameters Kk Zhu (Mon Sep 19 2011 - 05:46:05 PDT)
- [AMBER] force field of molecular crystals jun kit (Mon Sep 19 2011 - 11:20:25 PDT)
- [AMBER] Unit of the partial charge as given in the topology file Sindrila Dutta banik (Mon Sep 19 2011 - 11:47:26 PDT)
- [AMBER] iAPBS 1.2.0 - APBS 1.0.0 - Amber11 compilation error Kenneth Tussey (Mon Sep 19 2011 - 13:47:21 PDT)
- [AMBER] Self-Diffusion coefficient Bruno Rodrigues (Mon Sep 19 2011 - 14:43:31 PDT)
- [AMBER] How to build the surface of crystalline cellulose? bin wang (Mon Sep 19 2011 - 15:16:44 PDT)
- [AMBER] How to build the surface of crystalline cellulose? bin wang (Mon Sep 19 2011 - 20:19:31 PDT)
- [AMBER] new residue parameters transfer Yao Yao (Mon Sep 19 2011 - 22:37:30 PDT)
- [AMBER] charges on ligand kamlesh sahu (Mon Sep 19 2011 - 22:58:18 PDT)
- [AMBER] Automatic creation of charge and radius files for Delphi Jan-Philip Gehrcke (Tue Sep 20 2011 - 03:13:21 PDT)
- [AMBER] topology and coordinate files madhumita das (Tue Sep 20 2011 - 04:14:58 PDT)
- [AMBER] Instantaneous temperature in TI simulation Brian Radak (Tue Sep 20 2011 - 06:01:54 PDT)
- Re: [AMBER] Glycam06g and ff99SB cause the difference of DIHED (notattributed to the scaling factor) d944286.oz.nthu.edu.tw (Tue Sep 20 2011 - 08:32:38 PDT)
- [AMBER] tx/LEaP numlock. Ross Walker (Tue Sep 20 2011 - 09:38:01 PDT)
- [AMBER] problem with TI calculations Victor Ma (Tue Sep 20 2011 - 12:08:03 PDT)
- [AMBER] Xleap Installation Yao Yao (Tue Sep 20 2011 - 15:40:07 PDT)
- [AMBER] Help needed for Amber SCC-DFTB code 杨立江 (Tue Sep 20 2011 - 22:45:23 PDT)
- [AMBER] Error: peek_ewald_inpcrd: SHOULD NOT BE HERE Hirdesh Kumar (Tue Sep 20 2011 - 23:07:50 PDT)
- [AMBER] bug in respgen ? thomas.fox.boehringer-ingelheim.com (Wed Sep 21 2011 - 00:06:21 PDT)
- [AMBER] Grid and SDF Lorenzo Gontrani (Wed Sep 21 2011 - 03:53:47 PDT)
- [AMBER] Sleap and TIP4P BOX Guenegou, Guillaume [JRDFR] (Wed Sep 21 2011 - 04:42:51 PDT)
- [AMBER] Difficulties trying to derive charge for new acetylated serine Fabrício Bracht (Tue Sep 20 2011 - 22:36:32 PDT)
- [AMBER] Grid and SDF Lorenzo Gontrani (Wed Sep 21 2011 - 06:24:50 PDT)
- [AMBER] SASA calculation in Amber Horacio Pérez-Sánchez (Wed Sep 21 2011 - 09:45:19 PDT)
- [AMBER] Different Temps Coupling Yao Yao (Wed Sep 21 2011 - 10:35:56 PDT)
- [AMBER] RMSD fatahiya (Wed Sep 21 2011 - 23:13:02 PDT)
- [AMBER] GRID and SDF Lorenzo Gontrani (Thu Sep 22 2011 - 00:28:08 PDT)
- [AMBER] Amber parmbsc0 souvik sur (Thu Sep 22 2011 - 00:35:03 PDT)
- [AMBER] Grid and SDF Lorenzo Gontrani (Thu Sep 22 2011 - 00:40:41 PDT)
- [AMBER] Model building Aparna P (Thu Sep 22 2011 - 01:00:57 PDT)
- [AMBER] ICST truongco nguyen (Thu Sep 22 2011 - 02:10:49 PDT)
- [AMBER] Restart-Files in Sander Julian Zachmann (Thu Sep 22 2011 - 06:11:00 PDT)
- [AMBER] Amber parmbsc0 vs ff99 souvik sur (Thu Sep 22 2011 - 06:41:45 PDT)
- [AMBER] GB protocol problems for large RNAs Kasprzak, Wojciech (NIH/NCI) [C] (Thu Sep 22 2011 - 09:02:28 PDT)
- [AMBER] sander/amoeba parameter format Andrew Petersen (Thu Sep 22 2011 - 09:53:40 PDT)
- [AMBER] error when installing parallel sander / AmberTools1.5 Amber11 matheus froeyen (Thu Sep 22 2011 - 10:56:18 PDT)
- [AMBER] Large pressure fluctuations over the whole run Hernán Meier (Thu Sep 22 2011 - 16:14:54 PDT)
- [AMBER] XH/pi (X=C, O, N) interactions and stacking interactions in AMBER Rajesh Raju (Thu Sep 22 2011 - 16:24:39 PDT)
- [AMBER] AmberTools Parallel Compilation Issue Matteo Guglielmi (Thu Sep 22 2011 - 17:59:09 PDT)
- [AMBER] how to generate a correlation matrix for both protein and substrate atoms sunxi.comcast.net (Thu Sep 22 2011 - 22:08:13 PDT)
- Re: [AMBER] Grid and SDF - sorry for the mail spamming Lorenzo Gontrani (Thu Sep 22 2011 - 22:49:06 PDT)
- [AMBER] problem with nmodes calculation-260-residue protein hongphuc nguyen (Fri Sep 23 2011 - 02:15:37 PDT)
- [AMBER] RESP charge fitting shome sankar bhunia (Fri Sep 23 2011 - 04:22:37 PDT)
- [AMBER] hydrogen bonding Vijay Manickam Achari (Fri Sep 23 2011 - 05:17:06 PDT)
- [AMBER] load parmbsc0 and X-Ol for RNA David Condon (Fri Sep 23 2011 - 06:25:16 PDT)
- [AMBER] Antechamber Zachary Davis (Fri Sep 23 2011 - 10:17:38 PDT)
- [AMBER] nmode calculations kirtana S (Fri Sep 23 2011 - 14:52:11 PDT)
- [AMBER] Amber parmbsc0 force field souvik sur (Fri Sep 23 2011 - 21:25:11 PDT)
- [AMBER] AmberTools 1.4 Installation on Mac OSX 10.6 George Tzotzos (Sat Sep 24 2011 - 02:41:03 PDT)
- [AMBER] fixing rmsd values Massimiliano Porrini (Sun Sep 25 2011 - 08:22:13 PDT)
- [AMBER] Problems of Hbond calculation qiao xue (Sun Sep 25 2011 - 19:30:33 PDT)
- [AMBER] Regarding Force field souvik sur (Sun Sep 25 2011 - 22:28:36 PDT)
- [AMBER] Solvent model charges off by factor of 18.2223 or typo? Daniel Sindhikara (Sun Sep 25 2011 - 23:57:08 PDT)
- [AMBER] GAMESS to RESP input file shome sankar bhunia (Mon Sep 26 2011 - 03:46:25 PDT)
- [AMBER] ambertool question !!! Алексей Раевский (Mon Sep 26 2011 - 11:22:14 PDT)
- [AMBER] ambertool question !!! Алексей Раевский (Mon Sep 26 2011 - 11:23:58 PDT)
- [AMBER] Some common doubts about MMPBSA.py decomposition Rajesh Raju (Mon Sep 26 2011 - 12:24:36 PDT)
- [AMBER] dihedral parameters kirtana S (Mon Sep 26 2011 - 14:09:39 PDT)
- [AMBER] thermodynamic integration on protein mutation Jorge Iulek (Mon Sep 26 2011 - 17:34:51 PDT)
- [AMBER] Mol2 file creation Chidambar Kulkarni (Mon Sep 26 2011 - 20:57:36 PDT)
- [AMBER] non-bond interaction Anglea A. (Tue Sep 27 2011 - 00:01:24 PDT)
- [AMBER] GB protocol problems for large RNAs (follow-up) Kasprzak, Wojciech (NIH/NCI) [C] (Tue Sep 27 2011 - 07:09:10 PDT)
- [AMBER] giving acceptor mask in ptraj for hbond utility Bala subramanian (Tue Sep 27 2011 - 11:16:05 PDT)
- [AMBER] Fwd: fixing rmsd values (follow-up) Massimiliano Porrini (Tue Sep 27 2011 - 11:44:14 PDT)
- [AMBER] Chromophore Building Yao Yao (Tue Sep 27 2011 - 12:34:19 PDT)
- [AMBER] Failure building Amber 11 parallel on AmberTools1.5 George Tzotzos (Tue Sep 27 2011 - 13:24:03 PDT)
- [AMBER] Parallel compile error of Amber11 kurisaki (Tue Sep 27 2011 - 20:30:52 PDT)
- [AMBER] solvateBox or setBox or set box Neha Gandhi (Tue Sep 27 2011 - 23:36:29 PDT)
- [AMBER] PMEMD job was aborted kurisaki (Wed Sep 28 2011 - 00:00:15 PDT)
- [AMBER] sander outout using mdin=5 and idecomp=2 kurisaki (Wed Sep 28 2011 - 02:13:18 PDT)
- [AMBER] PCA Linda catherine (Wed Sep 28 2011 - 04:44:31 PDT)
- [AMBER] MMPBSA.py discrepancies in results George Tzotzos (Wed Sep 28 2011 - 06:20:28 PDT)
- [AMBER] Announcing the NVIDIA MD SimCluster Program (Free test drives available) Ross Walker (Wed Sep 28 2011 - 14:29:36 PDT)
- [AMBER] 1st DNA tutorial cannot save parameter Yao Yao (Wed Sep 28 2011 - 17:28:30 PDT)
- [AMBER] Survey Request - 10 minutes of your time please to help future AMBER development (http://surveys.nvidia.com/index.jsp?pi=f7d3e68a3e1b44841571e6ab4ce2f021) Ross Walker (Wed Sep 28 2011 - 19:01:08 PDT)
- [AMBER] PNEB on GPUs William Cantara (Wed Sep 28 2011 - 20:20:30 PDT)
- [AMBER] Parallel limit? Hu Ge (Wed Sep 28 2011 - 20:31:37 PDT)
- [AMBER] Parameter files :problem to save souvik sur (Wed Sep 28 2011 - 21:20:48 PDT)
- [AMBER] Query regarding MMPBSA in Amber11 Hirdesh Kumar (Wed Sep 28 2011 - 21:47:34 PDT)
- [AMBER] Chirality restraints Rajeswari A. (Thu Sep 29 2011 - 00:06:40 PDT)
- [AMBER] sander mpi error when unfolding the protein Chinh Su Tran To (Thu Sep 29 2011 - 00:43:24 PDT)
- [AMBER] GBSW AMBER Cindy Pembroke (Thu Sep 29 2011 - 00:52:16 PDT)
- Re: [AMBER] On Cationic Dummy Atom francesco oteri (Thu Sep 29 2011 - 02:26:32 PDT)
- [AMBER] AmberTools1.5 parallel implementation of mmpbsa.py - Incomplete installation? George Tzotzos (Thu Sep 29 2011 - 06:54:50 PDT)
- [AMBER] force field modification kirtana S (Thu Sep 29 2011 - 09:46:18 PDT)
- [AMBER] how NOT to label terminal residue Victor Ma (Thu Sep 29 2011 - 13:54:44 PDT)
- [AMBER] From amber to gromacs madhumita das (Fri Sep 30 2011 - 01:31:44 PDT)
- [AMBER] Failure to compile AmberTools 1.5 on linux Francesco Pietra (Fri Sep 30 2011 - 02:43:18 PDT)
- [AMBER] Amber 10/ambertool Installation error Kshatresh Dutta Dubey (Fri Sep 30 2011 - 06:12:59 PDT)
- [AMBER] Quick initial impressions of PNY water cooled GTX 580 and some numbers for the usual GPU benchmarks Gould, Ian R (Fri Sep 30 2011 - 08:15:36 PDT)
- [AMBER] MMPBSA: how to include only some residues Victor Ma (Fri Sep 30 2011 - 14:02:01 PDT)
- [AMBER] Parameters kirtana S (Fri Sep 30 2011 - 19:14:57 PDT)
- Last message date: Fri Sep 30 2011 - 19:30:02 PDT
- Archived on: Fri Dec 20 2024 - 05:54:26 PST
