PyMOL's new volume feature is very good for visualizing densities. This video shows how to use it: http://www.youtube.com/watch?v=tuAo_8-_HIc
Aysegul
________________________________________
From: Abhishek Mukhopadhyay [abmukho.vt.edu]
Sent: Thursday, September 08, 2011 12:56 PM
To: amber.ambermd.org
Subject: [AMBER] Water density/potential visualization
Hi,
I have a question which is probably not suitable for this group. But
any insight into this is of great help. I have a file containing x y z
and \rho(x,y,z) i.e. the electron density for water molecule. The
x,y,z are the coordinates in a cubical mesh with 81X81X81 small cubes.
Is there a way to visualize the electron density cloud/potential in
3D?
Thanks,
A.M.
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Received on Thu Sep 08 2011 - 11:30:02 PDT
