Dear David,
I did,
cd $AMBERHOME/AmberTools/src
./configure gnu
It is giving following:
root.mcu-ProLiant-ML350-G6:/usr/local/amber11/AmberTools/src# ./configure gnu
Your AMBERHOME environment variable should be set to /usr/local/amber11
Obtaining the gnu suite version:
gcc -v
The version is 4.4.5
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK
Validating the C++ compiler version:
g++ -v
The version is 4.4.5
OK
Testing the gfortran compiler:
gfortran -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
gfortran -O0 -c -o testp.f.o testp.f
gcc -o testp testp.c.o testp.f.o -lgfortran
OK
Testing pointer size:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size test_pointer_size.c
Detected 32 bit operating system.
Testing flex:
./configure: 1339: flex: not found
Unable to run flex; this is recommended for NAB
Please check your PATH, or install the program
We will try to solider on with precompiled files
Configuring NetCDF; (may be time-consuming)
NetCDF configure succeeded.
Configuring fftw-2.1.5; (may be time-consuming)
fftw-2.1.5 configure succeeded.
The configuration file, config.h, was successfully created.
The next step is to type 'make install'
Then I did
make clean
cd leap
make install
I am getting the following output:
Clip.o Clip.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CloseHook.o CloseHook.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CmapAlloc.o CmapAlloc.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrCmap.o CrCmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrPixFBit.o CrPixFBit.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CursorName.o CursorName.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtCache.o CvtCache.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtStdSel.o CvtStdSel.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DefErrMsg.o DefErrMsg.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DelCmap.o DelCmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DisplayQue.o DisplayQue.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Distinct.o Distinct.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrawLogo.o DrawLogo.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrRndRect.o DrRndRect.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o EditresCom.o EditresCom.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ExtAgent.o ExtAgent.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FToCback.o FToCback.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GetHost.o GetHost.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GrayPixmap.o GrayPixmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Initer.o Initer.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LocBitmap.o LocBitmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lookup.o Lookup.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LookupCmap.o LookupCmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lower.o Lower.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RdBitF.o RdBitF.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrOfWin.o ScrOfWin.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ShapeWidg.o ShapeWidg.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdCmap.o StdCmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBS.o StrToBS.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBmap.o StrToBmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToCurs.o StrToCurs.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToGrav.o StrToGrav.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToJust.o StrToJust.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToLong.o StrToLong.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToOrnt.o StrToOrnt.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToShap.o StrToShap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToWidg.o StrToWidg.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o UpdMapHint.o UpdMapHint.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o VisCmap.o VisCmap.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WidgetNode.o WidgetNode.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Xct.o Xct.c
ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o
ar: creating libXmu.a
a - AllCmap.o
a - Atoms.o
a - ClientWin.o
a - Clip.o
a - CloseHook.o
a - CmapAlloc.o
a - CrCmap.o
a - CrPixFBit.o
a - CursorName.o
a - CvtCache.o
a - CvtStdSel.o
a - DefErrMsg.o
a - DelCmap.o
a - DisplayQue.o
a - Distinct.o
a - DrawLogo.o
a - DrRndRect.o
a - EditresCom.o
a - ExtAgent.o
a - FToCback.o
a - GetHost.o
a - GrayPixmap.o
a - Initer.o
a - LocBitmap.o
a - Lookup.o
a - LookupCmap.o
a - Lower.o
a - RdBitF.o
a - ScrOfWin.o
a - ShapeWidg.o
a - StdCmap.o
a - StrToBS.o
a - StrToBmap.o
a - StrToCurs.o
a - StrToGrav.o
a - StrToJust.o
a - StrToLong.o
a - StrToOrnt.o
a - StrToShap.o
a - StrToWidg.o
a - UpdMapHint.o
a - VisCmap.o
a - WidgetNode.o
a - Xct.o
ranlib libXmu.a
make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/leap/src/Xmu'
cd src/Xpm && make
make[2]: Entering directory `/usr/local/amber11/AmberTools/src/leap/src/Xpm'
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o data.o data.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o create.o create.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o misc.o misc.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rgb.o rgb.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o scan.o scan.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parse.o parse.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o hashtable.o hashtable.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrI.o XpmCrBufFrI.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrP.o XpmCrDataFrP.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrBuf.o XpmCrPFrBuf.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToI.o XpmRdFToI.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrI.o XpmWrFFrI.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrP.o XpmCrBufFrP.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrBuf.o XpmCrIFrBuf.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrData.o XpmCrPFrData.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToP.o XpmRdFToP.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrP.o XpmWrFFrP.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrI.o XpmCrDataFrI.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrData.o XpmCrIFrData.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToData.o XpmRdFToData.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrData.o XpmWrFFrData.c
ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o
ar: creating libXpm.a
a - data.o
a - create.o
a - misc.o
a - rgb.o
a - scan.o
a - parse.o
a - hashtable.o
a - XpmCrBufFrI.o
a - XpmCrDataFrP.o
a - XpmCrPFrBuf.o
a - XpmRdFToI.o
a - XpmWrFFrI.o
a - XpmCrBufFrP.o
a - XpmCrIFrBuf.o
a - XpmCrPFrData.o
a - XpmRdFToP.o
a - XpmWrFFrP.o
a - XpmCrDataFrI.o
a - XpmCrIFrData.o
a - XpmRdFToData.o
a - XpmWrFFrData.o
ranlib libXpm.a
make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/leap/src/Xpm'
cd src/Xraw && make
make[2]: Entering directory `/usr/local/amber11/AmberTools/src/leap/src/Xraw'
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o 3d.o 3d.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllWidgets.o AllWidgets.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Arrow.o Arrow.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSink.o AsciiSink.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSrc.o AsciiSrc.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiText.o AsciiText.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Box.o Box.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clock.o Clock.c
Clock.c:48: warning: conflicting types for built-in function ‘round’
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Command.o Command.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o color.o color.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Container.o Container.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Dialog.o Dialog.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Form.o Form.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Grip.o Grip.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Label.o Label.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o List.o List.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Logo.o Logo.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MenuButton.o MenuButton.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Paned.o Paned.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Panner.o Panner.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Porthole.o Porthole.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Repeater.o Repeater.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Scrollbar.o Scrollbar.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrolledTable.o ScrolledTable.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Separator.o Separator.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Simple.o Simple.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SimpleMenu.o SimpleMenu.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Sme.o Sme.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeBSB.o SmeBSB.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeLine.o SmeLine.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StripChart.o StripChart.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o table.o table.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Table2.o Table2.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Text.o Text.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSink.o TextSink.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSrc.o TextSrc.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextAction.o TextAction.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextPop.o TextPop.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextTr.o TextTr.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Toggle.o Toggle.c
Toggle.c: In function ‘Notify’:
Toggle.c:422: warning: cast to pointer from integer of different size
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Tree.o Tree.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Vendor.o Vendor.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Viewport.o Viewport.c
gcc -c -I/usr/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XawInit.o XawInit.c
ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o
ar: creating libXaw.a
a - 3d.o
a - AllWidgets.o
a - Arrow.o
a - AsciiSink.o
a - AsciiSrc.o
a - AsciiText.o
a - Box.o
a - Clock.o
a - Command.o
a - color.o
a - Container.o
a - Dialog.o
a - Form.o
a - Frame.o
a - Grip.o
a - Label.o
a - List.o
a - Logo.o
a - MenuButton.o
a - Paned.o
a - Panner.o
a - Porthole.o
a - Repeater.o
a - Scrollbar.o
a - ScrolledTable.o
a - Separator.o
a - Simple.o
a - SimpleMenu.o
a - Sme.o
a - SmeBSB.o
a - SmeLine.o
a - StripChart.o
a - table.o
a - Table2.o
a - Text.o
a - TextSink.o
a - TextSrc.o
a - TextAction.o
a - TextPop.o
a - TextTr.o
a - Toggle.o
a - Tree.o
a - Vendor.o
a - Viewport.o
a - XawInit.o
ranlib libXaw.a
make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/leap/src/Xraw'
cd src/leap && make install
make[2]: Entering directory `/usr/local/amber11/AmberTools/src/leap/src/leap'
gcc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xAction.o xAction.c
xAction.c: In function ‘zActionTwistTorsions’:
xAction.c:1112: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type
build.h:68: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o x3d.o x3d.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xBasics.o xBasics.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaLeapc.o xaLeapc.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaUnitEditor.o xaUnitEditor.c
xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’:
xaUnitEditor.c:888: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type
build.h:75: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’
xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’:
xaUnitEditor.c:1335: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type
build.h:71: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTable.o xaTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomTable.o xaAtomTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o XrawRegistr.o XrawRegistr.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaCommand.o xaCommand.c
xaCommand.c: In function ‘zXACDisplayChildren’:
xaCommand.c:101: warning: format ‘%lX’ expects type ‘long unsigned int’, but argument 2 has type ‘Widget’
xaCommand.c:117: warning: format ‘%lX’ expects type ‘long unsigned int’, but argument 2 has type ‘Widget’
xaCommand.c: In function ‘zXACDisplayWidgetTree’:
xaCommand.c:146: warning: format ‘%lX’ expects type ‘long unsigned int’, but argument 2 has type ‘Widget’
xaCommand.c: In function ‘xtcpXACInitializeDirectoryList’:
xaCommand.c:840: warning: passing argument 4 of ‘qsort’ from incompatible pointer type
/usr/include/stdlib.h:761: note: expected ‘__compar_fn_t’ but argument is of type ‘int (*)(void *, void *)’
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTools.o xaTools.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomParmTable.o xaAtomParmTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaBondParmTable.o xaBondParmTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAngleParmTable.o xaAngleParmTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaParmEditor.o xaParmEditor.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTorsionParmTable.o xaTorsionParmTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaImproperParmTable.o xaImproperParmTable.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaHBondParmTable.o xaHBondParmTable.c
gcc -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a
../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp -lm -lpthread
../Xraw/libXaw.a(AsciiSrc.o): In function `InitStringOrFile':
AsciiSrc.c:(.text+0xfeb): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
m4 xaLeap.rm4 > XaLeap_wcl
/bin/sh: m4: not found
make[2]: *** [XaLeap_wcl] Error 127
make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/leap/src/leap'
make[1]: *** [install_xleap] Error 2
make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/leap'
make: *** [install] Error 2
At the end it is giving error,
and in between also it is saying something -D_FILE_OFFSET_BITS=64
so is this the bit problem again !!
please suggest the solution for this,
Thanks and regards
--
Sonali Dhindwal
“Live as if you were to die tomorrow. Learn as if you were to live forever.”
--- On Wed, 31/8/11, David A Case <case.biomaps.rutgers.edu> wrote:
From: David A Case <case.biomaps.rutgers.edu>
Subject: Re: [AMBER] problem in installing xleap
To: "AMBER Mailing List" <amber.ambermd.org>
Date: Wednesday, 31 August, 2011, 11:50 PM
On Wed, Aug 31, 2011, sonali dhindwal wrote:
>
> I have 32 bit ubuntu on my system.
>
> by running command
> ls -l xaLeap
> it is giving :
> ls: cannot access xaleap: No such file or directory
This means you didn't properly install xleap.
>
> and it may sound silly but i don't know how to apply patch,
> it will be very kind of you to please tell how to apply the same.
Don't worry about the patch for now; just do the following:
cd $AMBERHOME/AmberTools/src
./configure gnu (or whatever compiler you are using)
make clean
cd leap
make install
Then carefully look for any errors that arise.
....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 31 2011 - 22:00:02 PDT
