[AMBER] Failure to compile AmberTools 1.5 on linux

From: Francesco Pietra <chiendarret.gmail.com>
Date: Fri, 30 Sep 2011 11:43:18 +0200

Hello:

After a long while, having heard that bugs have been cleared from
gcc/gfortran, I was trying today
again to compile Amber

I am at Amber 10 and AmberTools 1.5, the latter patched bugfixes 1-18.
Debian-Linux amd64.
gcc/gfortran v. 4.6.1.4

On trying a serial compilation, while there was no warning in
"./configure gnu" I am getting from
"make install" an error that appears on recent mail, hower I have not
seen the solver.

Here the last part:

make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/chamber'
(cd pbsa && make install )
make[1]: Entering directory `/usr/local/amber11/AmberTools/src/pbsa'
cpp -traditional -P -DBINTRAJ amg1r5.f > _amg1r5.f
gfortran -c -O3 -mtune=generic -ffree-form -o amg1r5.o _amg1r5.f
_amg1r5.f:1204.16:

            ifg,a(jtrst),time,ndjtr,ium,mdjtr)
                1
Warning: Type mismatch in argument 'jtr' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:1217.58:

      call pcol(k-1,ierr,ia,ja,iw,imin,imax,imaxw,icg,ifg,u(irst), &
                                                          1
Warning: Type mismatch in argument 'ir' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:1224.26:

            imaxw,ifg,icg,u(irst),time,ierr,irow0,ncolx, &
                          1
Warning: Type mismatch in argument 'ncolor' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:1232.16:

            ifg,u(irst),nstcol,ncolx,time,nda,ndja,ium, &
                1
Warning: Type mismatch in argument 'ncolor' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:3461.23:

   external idec,random
                       1
Error: Return type mismatch of function 'random' at (1) (REAL(8)/REAL(4))
_amg1r5.f:3029.45:

            ja(jlo),a(jlo),f(ilo),u(ilo),nsp,a(jhi+1),a(jhi+1), &
                                             1
Warning: Type mismatch in argument 'isp' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:3095.45:

            ja(jlo),a(jlo),f(ilo),u(ilo),nsp,a(jhi+1),a(jhi+1), &
                                             1
Warning: Type mismatch in argument 'isp' at (1); passed REAL(8) to INTEGER(4)
_amg1r5.f:3619.17:

   external cgalf,cgeps,ctime
                 1
Error: Return type mismatch of function 'cgalf' at (1) (REAL(8)/REAL(4))
_amg1r5.f:3619.23:

   external cgalf,cgeps,ctime
                       1
Error: Return type mismatch of function 'cgeps' at (1) (REAL(8)/REAL(4))
make[1]: *** [amg1r5.o] Error 1
make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/pbsa'
make: *** [serial] Error 2
root.gig64:/usr/local/amber11/AmberTools/src#

Thanks for your kind attention

francesco pietra

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Received on Fri Sep 30 2011 - 03:00:02 PDT
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