On Sat, Sep 24, 2011 at 11:48 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> Just to clarify, I was referring to these error messages:
>
> > io.c:782: error: conflicting types for 'gzipFileSize'
> > io.c:681: note: previous definition of 'gzipFileSize' was here
> > io.c:814: error: conflicting types for 'bzip2FileSize'
> > io.c:728: note: previous definition of 'bzip2FileSize' was here
>
> I have seen this behavior before with early versions of a bugfix
> (bugfix.4 for AT 1.4) - the way the patch was initially created
> allowed it to be recursively applied, so that each application of the
> bugfix would insert new instances of gzipFileSize and bzipFileSize
> into $AMBERHOME/AmberTools/src/ptraj/io.c, resulting in the above
> error messages (I believe the problem has since been fixed). Since OP
> said he had copied the installation over from an earlier one this
> problem probably carried over as well.
>
To the OP (to avoid confusion), what Dan says above is completely true, and
I was not trying to suggest another cause for these errors. (Sorry for any
confusion it may have caused.) I was trying to comment on the practice of
copying remnants of old MacPorts installations over to a new one without
actually installing that port. MacPorts takes great pains to make sure that
it stays as self-contained as possible, so you should try your utmost to
avoid polluting that directory with anything, even (especially?) stuff from
old MacPorts installations.
As both Mengjuei and I pointed out, select ports are now built into port
itself, so commands like "gcc_select mp-gcc44" and "python_select python27"
have been replaced with "port select gcc mp-gcc44" and "port select python
python27", respectively.
All the best,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sat Sep 24 2011 - 17:30:03 PDT
