Hi Sara,
Such questions have a better chance of being answered if sent to the Amber
mailing list instead. I'm forwarding it to the list.
Gustavo.
---------- Forwarded message ----------
From: Sara Ahmadi
Date: Thu, Sep 8, 2011 at 11:22 PM
I'm a new user to amber simulation package. Now, I have a question on
calculationg hydrogen bonding and I couldnt find my answer in amber manual.
I want to know when amber calculate hydrogen bonding, weather it considers
periodic boundary condition or not since I used periodic boundary condition
in my calculation.
your responce would be appreciated
with best regards
Sara
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Received on Tue Sep 13 2011 - 07:30:03 PDT
