[AMBER] PMEMD job was aborted

From: kurisaki <kurisaki.ncube.human.nagoya-u.ac.jp>
Date: Wed, 28 Sep 2011 16:00:15 +0900

Dear Amber users and developers,

 

Thank you for usual support.

 

I am now using pmemd.parallel of amber11.

but suffered from sudden abortion of jobs.

The following error messages appeared.

 

[mpiexec.rcc101]HYDU_sock_read (./utils/sock/sock.c:223): read errno
(Input/output error)

[mpiexec.rcc101] control_cb (./pm/pmiserv/pmiserv_cb.c:249): assert
(!closed) failed

[mpiexec.rcc101] HYDT_dmxu_poll_wait_for_event
(./tools/demux/demux_poll.c:77): callback returned error status

[mpiexec.rcc101] HYD_pmci_wait_for_completion
(./pm/pmiserv/pmiserv_pmci.c:206): error waiting for event

[mpiexec.rcc101] main (./ui/mpich/mpiexec.c:404): process manager error
waiting for completion

 

Although all tests for parallel compiling were passed,

Pmemd.mpi jobs was frequently aborted.

 

I am most grateful if you give some advices to resolve this problem.

 

Yours sincerely,

 

                                                  Ikuo Kurisaki

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Received on Wed Sep 28 2011 - 00:30:02 PDT
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