This is related to MacPorts, not to what Dan Roe stated. gcc_select (and
all of the MacPorts select scripts) have been incorporated directly into
MacPorts itself. Thus, instead of using
sudo gcc_select mp-gcc44
use the command
sudo port select gcc mp-gcc44
Perhaps one of the Amberonmac bloggers want to update this advice (although
gcc_select *does* still need to be installed). Admittedly the MacPorts
folks don't tell normal users anywhere they're doing this, and I had to ask
on the macports email list to find out about that solution.
HTH,
Jason
On Sat, Sep 24, 2011 at 7:08 AM, George Tzotzos <gtzotzos.me.com> wrote:
> Following my earlier message and after some searching around I found that
> MacPorts did not install gcc_select.
>
> I did a quick and dirty job (copied it from another installation and move
> it to /opt/local/bin).
>
> Then
>
> $ sudo gcc_select mp-gcc44
> Selecting version "mp-gcc44" for gcc
>
> I proceed then to configure AmberTools. Then in the make install I get a
> number of errors of the type
>
> io.c:782: error: conflicting types for 'gzipFileSize'
> io.c:681: note: previous definition of 'gzipFileSize' was here
> io.c:814: error: conflicting types for 'bzip2FileSize'
> io.c:728: note: previous definition of 'bzip2FileSize' was here
>
> Would appreciate any help in solving this one.
>
> George
>
>
> On Sep 24, 2011, at 11:41 AM, George Tzotzos wrote:
>
> > Hi everybody,
> >
> > Recently I lost my hard drive and, alas, my Amber11 installation.
> >
> > I've been trying to repeat the steps of my last installation which were
> taken to a large extent from
> http://amberonmac.blogspot.com/2010/04/step-by-step-ambertools-14-installation.html
> >
> > I'm installing gcc44 from MacPorts
> >
> > sudo port install gcc44
> > ..............
> > ---> Installing gcc_select .0.1_5
> > ---> Activating gcc_select .0.1_5
> > ---> Cleaning gcc_select
> > ...............
> > ---> Installing gcc44 .4.4.6_0
> > ---> Activating gcc44 .4.4.6_0
> > ---> Cleaning gcc44
> >
> > Then do
> >
> > sudo port install gcc_select
> > ---> Cleaning gcc_select
> >
> > But doing
> >
> > sudo gcc_select mp-gcc44
> >
> > returns
> >
> > Error: Port mp-gcc44 not found
> >
> > This never happened in the past and I've done 3 different installations
> following this routine.
> >
> > I'm using OSX 10.6.5 on a Mac Pro 12 core machine.
> >
> > Needless to say that your help in overcoming this problem will be
> invaluable
> >
> > Thanks in advance
> >
> > George
> >
> >
> >
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sat Sep 24 2011 - 08:00:04 PDT
