Re: [AMBER] how NOT to label terminal residue

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 29 Sep 2011 17:06:24 -0400

On Thu, Sep 29, 2011 at 4:54 PM, Victor Ma <victordsmagift.gmail.com> wrote:

> hi all
>
> I''m using a truncated structure and I prefer the program not to label the
> terminus. How can I do that? Thanks.
>

What do you mean "label"? What program are you using? We need a more
detailed question to be able to help.

If you mean that you don't want charged termini added automatically, then
cap your structure with one of the neutral caps (ACE, NME, NHE, etc).

HTH,
Jason


>
>
> Victor
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-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Sep 29 2011 - 14:30:04 PDT
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