Hi Souvik,
yes, parmbsc0 is made for nucleotide sequences. You can find details in
this publication:
Alberto Pérez, Iván Marchán, Daniel Svozil, Jiri Sponer, Thomas E.
Cheatham III, Charles A. Laughton and Modesto Orozco, Biophysical
Journal Volume 92 June 2007 3817–3829.
You can download parmbsc0 from the developers webpage:
http://mmb.pcb.ub.es/PARMBSC0/
Regards,
Nadine
------------------------------------------------------------
Dr. Nadine Utz
Molecular Modelling& Bioinformatics Group
Institute for Research in Biomedicine (IRB) Barcelona
On 09/22/2011 09:35 AM, souvik sur wrote:
> hello,
>
>
> Can you please tell me about any reference where I can find information about "Amber parmbsc0".
>
> Can I use it for nucleotide sequences in MD simulation?
>
>
>
> regards,
> Souvik Sur
> Ph. D. Student
> Department Of Chemistry
> University Of Delhi
> India
>
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Received on Thu Sep 22 2011 - 01:00:04 PDT
