Dear all,
I would like to visualize the changes in secondary structure over the
course
of the trajectory, i.e. the ptraj secstruc output. And I found already a
solution which works, but which is very time consuming. And maybe one of
you has already a nicer and faster solution for this.
This is how I do it:
change letters for helix, sheet ... in numbers, plot (splot) a 2D-color
map with gnuplot. The problem here is that I need for each residue an
extra expression in the splot command, so if I have a 200 residue
protein this is really a lot of work.
Thanks a lot for any suggestion,
Nadine
------------------------
Dr. Nadine Utz
molecular modelling & bioinformatics group
IRB Barcelona
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Received on Tue Sep 13 2011 - 04:30:02 PDT
