On Mon, Sep 26, 2011, souvik sur wrote:
>
> I have made the .prmtop, .frcmod and .inpcrd files using parm99
> forcefield in Amber 9 and also done simulation upto 10ns but I have
> now chosen wrong force field ( actually I have to use parmbsc0) for
> nucleotides. Now my questions :
> (i) Can the output files support parmbsc0 forcefield, I mean that may I
> use these initial files for minimisation steps or not ?
> (ii) or have I to make all the initial files from beginning using
> parmbsc0 forcefield ?
It's not clear what you mean by "the output files" and "all the initial
files". Can you be more explicit about exactly what you want to do?
....dac
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Received on Mon Sep 26 2011 - 05:30:03 PDT
