Hello,
I have made the .prmtop, .frcmod and .inpcrd files using parm99 forcefield in Amber 9 and also done simulation upto 10ns but I have now chosen wrong force field ( actually I have to use parmbsc0) for nucleotides. Now my questions :
(i) Can the output files support parmbsc0 forcefield, I mean that may I use these initial files for minimisation steps or not ?
(ii) or have I to make all the initial files from beginning using parmbsc0 forcefield ?
regards,
Souvik Sur
Ph. D. Student
Department Of Chemistry
University Of Delhi
India
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Received on Sun Sep 25 2011 - 22:30:03 PDT
